Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,587,779 – 16,587,881 |
Length | 102 |
Max. P | 0.850149 |
Location | 16,587,779 – 16,587,881 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 79.32 |
Mean single sequence MFE | -35.92 |
Consensus MFE | -20.75 |
Energy contribution | -21.33 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.10 |
Mean z-score | -2.01 |
Structure conservation index | 0.58 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790599 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16587779 102 + 27905053 GGCCUGCCACUCGUGUUGGGCGAACACGCCCACGGCGAGCACCAGCAUAAAAAGCAAAUAGCUGCGCCCCAAAAUCGACGACGG---GAACAUUUUG---------CCCGACUC ((((((...(((((..((((((....))))))..)))))...)))........(((......)))))).............(((---(.........---------)))).... ( -31.90) >DroVir_CAF1 172570 108 + 1 CGCCUGCCACUCGUGCUGGGCGAACACGCCCACGACCAGCGCCAGCACAAAAAGCAGGUAGCUGCGCCCCAAAAUCGUUGACGGCAGAAACAA---AACCAUGUU---UGUUUG ...(((((....((((((((((....))))).((.....))..))))).....((((....)))).................)))))((((((---(......))---))))). ( -34.70) >DroPse_CAF1 146239 111 + 1 AGCCUGCCACUCGUGCUGGGCGAACACGCCCACGGCGAGUACCAGCAUAAAAAGCAGGUAGCUGCGCCCCAAAAUCGUCGAGGG---AAACAUUCUAGUUAUGUUUUCUGGCUA ((((.....((((.((((((((....)))))).((((((((((.((.......)).))).))).))))........))))))((---((((((.......)))))))).)))). ( -41.60) >DroWil_CAF1 165898 101 + 1 AGCCUGCCACUCAUGCUGAGCUAACACACCCACAGUCAGCACCAGCAUGAAAAGCAGAUAGCUGCGCCCUAAAAUAGUCGAAGG---AAACAUUUUG---------UCCC-UUC (((((((...((((((((.(((.((.........)).)))..))))))))...))))...)))................(((((---..((.....)---------).))-))) ( -25.90) >DroAna_CAF1 141395 100 + 1 GGCCUGCCACUCGUGCUGGGCGAACACGCCCACGGCGAGCACCAGCAUAAAAAGCAGGUAGCUGCGCCCCAAAAUCGUCGAGGG---GAACAUUUUG---------U--AGCUG .((((((.....(((((((((.....((((...)))).)).))))))).....))))))(((((((((((...........)))---).......))---------)--)))). ( -41.21) >DroPer_CAF1 153594 111 + 1 GGCCUGCCACUCGUGCUGGGCGAACACGCCCACGGCGAGUACCAGCAUAAAAAGCAGGUAGCUGCGCCCCAAAAUCGUCGAGGG---AAACAUUCUAGUUAUGCUUUCUGGCUA ((((....((((((..((((((....))))))..))))))...(((((((...((((....))))..(((...........)))---...........)))))))....)))). ( -40.20) >consensus GGCCUGCCACUCGUGCUGGGCGAACACGCCCACGGCGAGCACCAGCAUAAAAAGCAGGUAGCUGCGCCCCAAAAUCGUCGAGGG___AAACAUUUUA_________UCUGGCUA .(((((...(((((..((((((....))))))..)))))...)))........((((....))))))............................................... (-20.75 = -21.33 + 0.59)
Location | 16,587,779 – 16,587,881 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 79.32 |
Mean single sequence MFE | -40.37 |
Consensus MFE | -28.58 |
Energy contribution | -28.03 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.32 |
Mean z-score | -1.67 |
Structure conservation index | 0.71 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.850149 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16587779 102 - 27905053 GAGUCGGG---------CAAAAUGUUC---CCGUCGUCGAUUUUGGGGCGCAGCUAUUUGCUUUUUAUGCUGGUGCUCGCCGUGGGCGUGUUCGCCCAACACGAGUGGCAGGCC (((.((((---------.((....)))---))).).))........(((((((....))))........(((.((((((...((((((....))))))...)))))).)))))) ( -36.90) >DroVir_CAF1 172570 108 - 1 CAAACA---AACAUGGUU---UUGUUUCUGCCGUCAACGAUUUUGGGGCGCAGCUACCUGCUUUUUGUGCUGGCGCUGGUCGUGGGCGUGUUCGCCCAGCACGAGUGGCAGGCG .(((((---((......)---))))))(((((.((((.....)))).).))))...((((((.(((((((((((....)))..(((((....))))))))))))).)))))).. ( -43.20) >DroPse_CAF1 146239 111 - 1 UAGCCAGAAAACAUAACUAGAAUGUUU---CCCUCGACGAUUUUGGGGCGCAGCUACCUGCUUUUUAUGCUGGUACUCGCCGUGGGCGUGUUCGCCCAGCACGAGUGGCAGGCU .((((...((((((.......))))))---((((((..........((((.((.((((.((.......)).)))))))))).((((((....))))))...)))).))..)))) ( -41.40) >DroWil_CAF1 165898 101 - 1 GAA-GGGA---------CAAAAUGUUU---CCUUCGACUAUUUUAGGGCGCAGCUAUCUGCUUUUCAUGCUGGUGCUGACUGUGGGUGUGUUAGCUCAGCAUGAGUGGCAGGCU (((-((((---------........))---)))))...........(((...))).((((((.((((((((((.((((((.........)))))))))))))))).)))))).. ( -39.30) >DroAna_CAF1 141395 100 - 1 CAGCU--A---------CAAAAUGUUC---CCCUCGACGAUUUUGGGGCGCAGCUACCUGCUUUUUAUGCUGGUGCUCGCCGUGGGCGUGUUCGCCCAGCACGAGUGGCAGGCC .((((--.---------......((.(---(((...........)))).)))))).((((((.((..(((((((....)))..(((((....)))))))))..)).)))))).. ( -39.41) >DroPer_CAF1 153594 111 - 1 UAGCCAGAAAGCAUAACUAGAAUGUUU---CCCUCGACGAUUUUGGGGCGCAGCUACCUGCUUUUUAUGCUGGUACUCGCCGUGGGCGUGUUCGCCCAGCACGAGUGGCAGGCC ..(((....(((((((((((((((((.---.....))).)))))))...((((....))))...)))))))(.((((((...((((((....))))))...)))))).).))). ( -42.00) >consensus CAGCCAGA_________CAAAAUGUUU___CCCUCGACGAUUUUGGGGCGCAGCUACCUGCUUUUUAUGCUGGUGCUCGCCGUGGGCGUGUUCGCCCAGCACGAGUGGCAGGCC ..............................................(((((((....))))........(((.((((((...((((((....))))))...)))))).)))))) (-28.58 = -28.03 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:03 2006