| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,579,678 – 16,579,770 |
| Length | 92 |
| Max. P | 0.892712 |
| Location | 16,579,678 – 16,579,770 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.69 |
| Mean single sequence MFE | -19.50 |
| Consensus MFE | -12.34 |
| Energy contribution | -12.65 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.892712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16579678 92 + 27905053 -----UUCGACU-------UACAGAUCGCAGCAUAUAUAUGCUACCCAUUACAAACAUAAACGAAAGUAUUAUGCGGUCAAAAC---CGACUCAUUUGUUGUUUGAG------------- -----.((((..-------....(((((((((((....))))).............((((((....)).)))))))))).....---((((......)))).)))).------------- ( -20.50) >DroPse_CAF1 137638 92 + 1 -----CUCAUUC-------CACAGAUCGCAGCAUAUUUAUGCAUCCCAUUAUAAACAUAAGCGAAAGUAUUAUGCGGUCAAUAC---AAACCCAUAUGUUGUUUGAG------------- -----((((..(-------.((.(((((((((((....))))..................((....))....))))))).(((.---.......))))).)..))))------------- ( -19.30) >DroGri_CAF1 200364 97 + 1 UUUAUUUUUAUU-------CACAGAUCGCAGCAUAUUUAUGCCUCCCAUUACAAACAUAAACGAAAAUAUUAUGCGGUCAAUAC---AAACUCAUAUGUUGUUUGAG------------- ............-------....(((((((..((((((.((....................)).))))))..)))))))....(---((((.........)))))..------------- ( -14.75) >DroWil_CAF1 157051 111 + 1 -----UUUGUUUCG-UUUUCACAGAUCGCAGCAUAUUUAUGCCUCCCAUUACAAACAUAAACGAAAAUAUUAUGCUGUCAAUAC---AAACUCAUAUGUUGUUUGAGAGGCCUCAUCUGA -----.........-......(((((.((((((((((((((..............)))))).........)))))))).....(---((((.........))))).........))))). ( -17.14) >DroAna_CAF1 132931 102 + 1 -----UUCGACUCGAUUCCCACAGAUCGCAGCAUAUCUAUGCUACCCAUUACAAACACAAACGAAAGUAUUACGCGGUCAAAACGAACAACUCCUAUGUUGUUUGAU------------- -----..................(((((((((((....))))).................((....)).....))))))....((((((((......))))))))..------------- ( -26.00) >DroPer_CAF1 145032 92 + 1 -----CUCAUUC-------CACAGAUCGCAGCAUAUUUAUGCAUCCCAUUAUAAACAUAAGCGAAAGUAUUAUGCGGUCAAUAC---AAACCCAUAUGUUGUUUGAG------------- -----((((..(-------.((.(((((((((((....))))..................((....))....))))))).(((.---.......))))).)..))))------------- ( -19.30) >consensus _____UUCGAUU_______CACAGAUCGCAGCAUAUUUAUGCAUCCCAUUACAAACAUAAACGAAAGUAUUAUGCGGUCAAUAC___AAACUCAUAUGUUGUUUGAG_____________ .......................(((((((((((....))))..................((....))....))))))).........(((......))).................... (-12.34 = -12.65 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:00 2006