Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,575,033 – 16,575,131 |
Length | 98 |
Max. P | 0.880307 |
Location | 16,575,033 – 16,575,131 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 78.58 |
Mean single sequence MFE | -39.53 |
Consensus MFE | -34.72 |
Energy contribution | -33.87 |
Covariance contribution | -0.86 |
Combinations/Pair | 1.29 |
Mean z-score | -1.49 |
Structure conservation index | 0.88 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16575033 98 + 27905053 AAAGCCGAACCCUGAGCGGCGUGGUCUUGGCCACAUUGGCUGGAGCUGGCUAUGCCGUGUUUAGGGUGAGUAAUCCGCCGUUCGCCCACAUGGGAUGU .....(((((.((((((((((((((((..(((.....)))..)....)))))))))))..))))((((.......)))))))))(((....))).... ( -39.70) >DroPse_CAF1 132943 85 + 1 AGAGUCGGACUCUGAGCGGCGUCGUUCUGGCCACACUGGCCGGCGCCGGCUAUGCCGUGUUCCGGGUAAGUCC--------UUGCCUCC-----GUGU .....((((..(.((((((((((.....((((.....))))))))))(((...)))..)))).)(((((....--------))))))))-----)... ( -32.70) >DroSec_CAF1 131248 98 + 1 AAAGCCGAACCCUAAGCGGCGUGGUCCUGGCCACAUUGGCCGGAGCUGGCUAUGCCGUGUUUAGGGUGAGUAAUCCGUCGCCCGCCCACAUGGAAUGU ...((...((((((((((((((((((((((((.....))))))....)))))))))))..)))))))..))..(((((.(........)))))).... ( -40.90) >DroEre_CAF1 135419 90 + 1 AAAGCCGAACCCUGAGCGGCGUGGUCCUGGCCACAUUGGCCGGAGCUGGCUAUGCCGUGUUUAGGGUGAGUAAUCCGGCACUCGCCCUC--------G ...((((.((((((((((((((((((((((((.....))))))....)))))))))))..)))))))((....))))))..........--------. ( -45.50) >DroYak_CAF1 131425 98 + 1 AAAGCCGAACCCUGAGCGGCGUGGUCCUGGCCACAUUGGCCGGAGCUGGCUAUGCCGUGUUUAGGGUGAGUACUCCGUCCCUCGCCCACAUGGGAUGU ...((...((((((((((((((((((((((((.....))))))....)))))))))))..)))))))..))....((((((..........)))))). ( -46.30) >DroPer_CAF1 140254 85 + 1 AGAGUCGGACUCUGAGCGGCGUCGUUCUGGCCACACUGGCCGGCGCCGGCUAUGCCGUGUUCCGGGUAAGUCC--------UUGCCUUC-----GUGU ((((.....))))((((((((((.....((((.....))))))))))(((...)))..)))).((((((....--------))))))..-----.... ( -32.10) >consensus AAAGCCGAACCCUGAGCGGCGUGGUCCUGGCCACAUUGGCCGGAGCUGGCUAUGCCGUGUUUAGGGUGAGUAAUCCG_C_CUCGCCCAC_____AUGU ......((((.....(((((((((((((((((.....))))))....))))))))))))))).(((((((..........)))))))........... (-34.72 = -33.87 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:57 2006