Locus 6328

Sequence ID 3R_DroMel_CAF1
Location 16,552,153 – 16,552,243
Length 90
Max. P 0.602470
window10320

overview

Window 0

Location 16,552,153 – 16,552,243
Length 90
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 82.87
Mean single sequence MFE -35.53
Consensus MFE -29.86
Energy contribution -31.08
Covariance contribution 1.22
Combinations/Pair 1.08
Mean z-score -1.43
Structure conservation index 0.84
SVM decision value 0.14
SVM RNA-class probability 0.602470
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16552153 90 - 27905053
--------CCAUGGCAACCGUG---------GAAAUCGUGGAAAUCGCAGCGGGACUGCAGAUUGGCGGCGGAGGAAUCGCUGGCGAUGCGGUUGCCAUAAUGCCCG
--------..(((((((((((.---------...(((((...((((((((.....)))).))))..((((((.....))))))))))))))))))))))........ ( -36.70)
>DroSec_CAF1 108203 90 - 1
--------CCAUGGCAACCGUG---------GAAAUCGUGGAAAUCGCAGCGGGACUGCAGAUUGGCGGCGGAGGAUUCGCUGGCGAUGCGGUUGCCAUAAUGCCCG
--------..(((((((((((.---------...(((((...((((((((.....)))).))))..(((((((...)))))))))))))))))))))))........ ( -37.60)
>DroSim_CAF1 112436 90 - 1
--------CCAUGGCAACCGUG---------GAAAUCGUGGAAAUCGCAGCGGGACUGCAGAUUGGCGGCGGAGGAUUCGCUGGCGAUGCGGUUGCCAUAAUGCCCG
--------..(((((((((((.---------...(((((...((((((((.....)))).))))..(((((((...)))))))))))))))))))))))........ ( -37.60)
>DroEre_CAF1 111086 99 - 1
--------CCAUGGCAACGGUGCAAAUGAUGGAAAUCGUGGAAAUCGCAGCGGGACUGCAGAUUGGCGGCGGAAGAUUCACUGGCGAUGCGGUUGCCAUAAUGCCCG
--------..((((((((.((....(((((....)))))....(((((((.(((.((((......))))(....).))).)).))))))).))))))))........ ( -32.70)
>DroYak_CAF1 102566 107 - 1
UUACUCAUCCAUGGCAACCGUGGAAAUGGUGGAAAUCGUGGAAAUCGCAGUGGGACUGCAGAUUGGCGGCGGAGGAUUCGCUGGCGAUGCGGUUGCCAUAAUGCCCG
..........(((((((((((....(((((....))))).......((((.....))))..((((.(((((((...))))))).)))))))))))))))........ ( -41.00)
>DroAna_CAF1 105355 80 - 1
--------CCAUGGUAACCGU---------------CGCUGAAAUCGCAUCUAGACUGCAGAUUGGCGGGGGAGGGGG----UCUGAUGCGGUUGCCAUAAUGCCCG
--------..(((((((((((---------------..(.((..((.(.(((...((((......)))).))))))..----)).)..)))))))))))........ ( -27.60)
>consensus
________CCAUGGCAACCGUG_________GAAAUCGUGGAAAUCGCAGCGGGACUGCAGAUUGGCGGCGGAGGAUUCGCUGGCGAUGCGGUUGCCAUAAUGCCCG
..........(((((((((((.........................((((.....))))..((((.((((((.....)))))).)))))))))))))))........ (-29.86 = -31.08 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:47 2006