| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,543,190 – 16,543,280 |
| Length | 90 |
| Max. P | 0.680045 |
| Location | 16,543,190 – 16,543,280 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 94.14 |
| Mean single sequence MFE | -32.77 |
| Consensus MFE | -28.16 |
| Energy contribution | -28.73 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.680045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16543190 90 + 27905053 AACAACUCGGGCAUAUCUCCAGCAUCGUGGCAGUGGGAGCUGCCCAUAUUGCGCAUACGUCACGUGCGCC-CCGAGUUGCAUGCGUAAUAU ..((((((((((.........(((..((((((((....)))).))))..)))((((.......))))).)-))))))))............ ( -33.90) >DroSec_CAF1 99062 91 + 1 AACAGCUCGGGCGUAUCUCCAGCAUCGUGGCAGUGGGAGCUGCCCAUAUUGCGCAUACGUCACGUGCGCCCCCGAGUUGCAUGCGUAAUAU ..(((((((((.((.......(((..((((((((....)))).))))..)))((((.......)))))).)))))))))............ ( -34.80) >DroEre_CAF1 101695 91 + 1 AACAGCCCAAGCAUAUCUCCGGCAUCGUGGCAGUGGGAGCUGCCCAUAUUGCGCAUACGUCACGUGCGUCCCCGAGUUGCAUGCGUAAUAU ....(((..((.....))..)))...(.((((((....)))))))(((((((((((..((.((...((....)).)).))))))))))))) ( -27.60) >DroYak_CAF1 93176 91 + 1 AACAACUCGGGCAUAUCUCCGACGUCGUGGCAGUGGGAGCUGCCCAUAUUGCGCAUACGUCACGUGCGCCCCCGAGUUGCAUGCGUAAUAU ..(((((((((((...((((.((((....)).)).)))).))))).....((((((.......))))))....))))))............ ( -34.80) >consensus AACAACUCGGGCAUAUCUCCAGCAUCGUGGCAGUGGGAGCUGCCCAUAUUGCGCAUACGUCACGUGCGCCCCCGAGUUGCAUGCGUAAUAU ..(((((((((...............(.((((((....))))))).....((((((.......)))))).)))))))))............ (-28.16 = -28.73 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:46 2006