Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,530,848 – 16,530,949 |
Length | 101 |
Max. P | 0.931555 |
Location | 16,530,848 – 16,530,949 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 90.14 |
Mean single sequence MFE | -39.50 |
Consensus MFE | -31.50 |
Energy contribution | -31.34 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.17 |
Mean z-score | -2.00 |
Structure conservation index | 0.80 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931555 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16530848 101 - 27905053 UCCUAGUUGUGUGGCCAUAGCUGU------GUUGUUGCUGCAGCUGCACAGCAGCUGUCAGUUGCACAUUUCGCCGACGGCAGGGCGAAUGGUGAAUUUGUCCCCAG .....(((((.((((...((.(((------((....(((((((((((...))))))).)))).)))))))..))))))))).((((((((.....)))))))).... ( -40.20) >DroSec_CAF1 86399 101 - 1 UCCUAGUUGUGUGGCCGUAGCUGU------GUUGUUGCUGCAGCUGCACAGCAGCUGUCAGUUGCACAUUUCGCCGAUGGCAGGGCGAACGGUGAAUUUGUCCCCAG .....((((((..((.(((((...------......))))).))..))))))..(((.(((...(((..((((((........))))))..)))...)))....))) ( -38.00) >DroSim_CAF1 91045 101 - 1 UCCUAGUUGUGUGGCCAUAGCUGU------GUUGUUGCUGCAGCUGCACAGCAGCUGUCAGUUGCACAUUUCGCCGAUGCCAGGGCGAAUGGUGAAUUUGUCCCCAG ....(((((((....)))))))((------((....(((((((((((...))))))).)))).))))..((((((........))))))(((.((.....)).))). ( -37.80) >DroEre_CAF1 89029 101 - 1 UCCUAGUUGUGUGGCCAUAGCUGU------GUUGUUGCUGCAGCUGCUCAGCAGCUGUCAGUUGCACAUUUCGCCGUCGGCAAGCGGAAUGGCGAAUUUGAGCCCAU ........(((.(((((....(((------((....(((((((((((...))))))).)))).))))).(((((((((.(....).).))))))))..)).)))))) ( -40.60) >DroYak_CAF1 84109 107 - 1 UCCUAGUUGUGUGGCCAUAGCUGUAGCUGAGUUGUUGCAGCAGCUGCUCAGCAGCUGUCAGUUGCACAUUUCGCCGACAGCAAGCGGAAUGGCGAAUUUGAGCCCAU ........(((.(((....((((((((......))))))))((((((...)))))).(((.((((.((((((((.........))))))))))))...))))))))) ( -40.90) >consensus UCCUAGUUGUGUGGCCAUAGCUGU______GUUGUUGCUGCAGCUGCACAGCAGCUGUCAGUUGCACAUUUCGCCGACGGCAGGGCGAAUGGUGAAUUUGUCCCCAG .......((((..((.((((((((......(((((....)))))......))))))))..))..)))).(((((((.(((....)))..)))))))........... (-31.50 = -31.34 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:45 2006