Locus 6325

Sequence ID 3R_DroMel_CAF1
Location 16,530,439 – 16,530,541
Length 102
Max. P 0.591889
window10317

overview

Window 7

Location 16,530,439 – 16,530,541
Length 102
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 81.50
Mean single sequence MFE -24.87
Consensus MFE -15.22
Energy contribution -14.50
Covariance contribution -0.72
Combinations/Pair 1.23
Mean z-score -1.83
Structure conservation index 0.61
SVM decision value 0.12
SVM RNA-class probability 0.591889
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16530439 102 + 27905053
UGGGAAUUACUUGAAGUAAUUAAAAUUUAAUUAAUGGCCCGCCCGGCUGAUAAUGUUAAGUAGUUG-GGCCAUUAGCAGAGCCCCCACUUUUUCACUUUGCCC
((((((((((.....)))))).........(((((((((((....(((..........)))...))-))))))))).......))))................ ( -26.10)
>DroPse_CAF1 86450 101 + 1
UGAAAAUUGCUUUAAGUAAUUAAAAUUGAAUUAAUGGCUUAGCUGCCUGAUAUUGCUAAGUAGUUGGGGCCAUUAACAGAUCUC--AUUCUACCGAUUUAUCU
....((((((.....)))))).((((((..((((((((((((((((.((.......)).)))))).)))))))))).(((....--..)))..)))))).... ( -22.90)
>DroSec_CAF1 85995 102 + 1
UGGGAAUUACUUGAAGUAAUUAAAAUUUAAUUAAUGGCCCGCCCGGCUGAUAAUGUUAAGUAGUUG-GGCCAUUAGCAGAGCCCCCACUUUUUCACUUUGUCC
((((((((((.....)))))).........(((((((((((....(((..........)))...))-))))))))).......))))................ ( -26.10)
>DroYak_CAF1 83723 102 + 1
UGCGAAUUACUUGAAGUAAUUAAAAUUUAAUUAAUGGCCCGCCUGGCUGAUAAUGUUAAGUAGUUG-GGCCAUUAGCUGAGACCCUGCUUUUUCACUUCGUCC
.(((((......((((((.......((((.(((((((((((.(((.((..........))))).))-))))))))).))))....)))))).....))))).. ( -26.10)
>DroAna_CAF1 82674 101 + 1
UGAAAAUGACUCCAAGUAAUUAAAAUUUAAUUAAUGGCUUAGCUGGCUGAUAAUGUUAAGUAGUUG-GGCCAUUAACAGAUACC-CACAUUUUCACUUUGCUC
((((((((((.....)).............(((((((((((((((.((..........))))))))-)))))))))........-..))))))))........ ( -25.10)
>DroPer_CAF1 87172 101 + 1
UGAAAAUUGCUUUAAGUAAUUAAAAUUGAAUUAAUGGCUUAGCUGCCUGAUAUUGCUAAGUAGUUGGGGCCAUUAACAGAUCUC--AUUCUACCGAUUUAUCU
....((((((.....)))))).((((((..((((((((((((((((.((.......)).)))))).)))))))))).(((....--..)))..)))))).... ( -22.90)
>consensus
UGAAAAUUACUUGAAGUAAUUAAAAUUUAAUUAAUGGCCCACCUGGCUGAUAAUGUUAAGUAGUUG_GGCCAUUAACAGAGCCC_CACUUUUUCACUUUGUCC
....((((((.....)))))).........(((((((((((.(((.((..........))))).)).)))))))))........................... (-15.22 = -14.50 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:44 2006