Locus 6324

Sequence ID 3R_DroMel_CAF1
Location 16,522,006 – 16,522,101
Length 95
Max. P 0.500000
window10316

overview

Window 6

Location 16,522,006 – 16,522,101
Length 95
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 71.63
Mean single sequence MFE -17.72
Consensus MFE -8.77
Energy contribution -8.58
Covariance contribution -0.19
Combinations/Pair 1.44
Mean z-score -1.53
Structure conservation index 0.50
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16522006 95 - 27905053
UCACACCCACC--------CACCAACACUGGCGAG-AAUCGUCGUGUGGCAGCCUUGAAAUAUGCUUUGUCUCCUCGCAAACAAACACACA----------CACACACACAUUU
...........--------..........((((..-...))))((((((((...........)))(((((......)))))....))))).----------............. ( -14.80)
>DroPse_CAF1 77011 100 - 1
-CACAACCAC--------UUACGGACACAGUCAAAAAAUCAGCGUGUGGCAGCCUUGAAAUAUGCUUUGUCUACACUCCGUCACACGCAUACAUACAUACAUAUG----UGCU-
-((((.((..--------....)).................((((((((((((..........))).((....))....)))))))))...............))----))..- ( -19.80)
>DroSec_CAF1 77708 99 - 1
UCACACCCACCCGUUCUCUCACCAACACUGGCGAG-AAUCGUCGUGUGGCAGCCUUGAAAUAUGCUUUGUCUCCUCGCAAACAAACACACA----------CACA----CACUC
...........((...((((.(((....))).)))-)..))..((((((((...........)))(((((......)))))....))))).----------....----..... ( -18.80)
>DroSim_CAF1 82333 99 - 1
UCACACCCACCCGUUCUCUCACCAACACUGGCGAG-AAUCGUCGUGUAGCAGCCUUGAAAUAUGCUUUGUCUCCUCGCAAACAAACACACA----------CACA----CACUU
...........((...((((.(((....))).)))-)..))..((((.(((...........)))(((((......)))))...))))...----------....----..... ( -15.60)
>DroYak_CAF1 74546 99 - 1
UUCCACCCACCCUUUGCCUCACCAAUACUGGCGCG-AGUCGUCGUGUGGCAGCCUUGAUAUAUGUUUUGUCUCCUCGCAAACAAACAUACA----------CACA----CACUC
.............(((((.(((....((.(((...-.))))).))).)))))........((((((((((......)))...)))))))..----------....----..... ( -18.00)
>DroPer_CAF1 77593 97 - 1
CCACAACCAC--------UUACUGACACAGUCAAAAAAUCAGCGUGUGGCAGCCUUGAAAUAUGCUUUGUCUACACUUCGUCACACGCAUACA----UACAUAUG----UACU-
..........--------....((((...))))........((((((((((((..........))).((....))....))))))))).((((----(....)))----))..- ( -19.30)
>consensus
UCACACCCACC_______UCACCAACACUGGCGAG_AAUCGUCGUGUGGCAGCCUUGAAAUAUGCUUUGUCUCCUCGCAAACAAACACACA__________CACA____CACU_
.............................(((((....)))))((((((((...........))).(((........))).....)))))........................ ( -8.77 =  -8.58 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:43 2006