Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,329,022 – 2,329,128 |
Length | 106 |
Max. P | 0.891723 |
Location | 2,329,022 – 2,329,128 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 79.57 |
Mean single sequence MFE | -23.70 |
Consensus MFE | -14.04 |
Energy contribution | -14.84 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.15 |
Mean z-score | -2.15 |
Structure conservation index | 0.59 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2329022 106 - 27905053 ACAGAGCACGCAUUGAUUGCAUUUCGGUAUUCUUCUAUUAUUUUAUGUAAUGGAAGGUACAC------CUGAAAAACUCU-AUCUAUGUUUUCAUAUCCUGAGUUCAUUUAAG-- ..((((...(((.....))).(((((((..(((((((((((.....)))))))))))...))------).))))..))))-....(((..((((.....))))..))).....-- ( -25.00) >DroSec_CAF1 34772 107 - 1 ACGGAGCACGCAUUGAUUGCAU-CCGGUAUUCUUCUAUUAUUUUAAGUAAUGGAAGGUACAC------CUGAAUAACUCU-AUCUAUAUUUUCAUAUCCUGAGUUCAUUCAAACU .((((....(((.....))).)-)))((((.((((((((((.....))))))))))))))..------.((((((((((.-...(((......)))....))))).))))).... ( -27.50) >DroSim_CAF1 34966 107 - 1 ACGGAGCACGCAUUGAUUGCAU-CCGGUAUUCUUCUAUUAUUUUAAGUAAUGGAAGGUACAC------CUGAAUAACUCU-AUCUAUAUUUUCAUAUCCUGAGUUCAUUCAAACU .((((....(((.....))).)-)))((((.((((((((((.....))))))))))))))..------.((((((((((.-...(((......)))....))))).))))).... ( -27.50) >DroEre_CAF1 40106 103 - 1 ACUGAGCACGCAUUGAUUUUAU-UCGGCAUUCUUCUAUUAUUUUAUGUAAUGGCAUGUACACCGGUUCCUGAAUAACUGU-AACUA--------AGCCCUGAGUUCAUUUAAG-- ..(((((.......((......-))(((......(((((((.....)))))))....((((...(((....)))...)))-)....--------.)))....)))))......-- ( -15.20) >DroYak_CAF1 34515 104 - 1 ACCGAGCCCGCAUUGAUUGUAU-UCGGUAUCAUUCUAUUAUUUUAACUAAUGGAAGGUACACCGGUUGCUAAAUAACUCCAAACUU--------UACCCGGAGUUUAUUUAAA-- ((((.....(((.....)))..-...(((((.((((((((.......)))))))))))))..))))...(((((((((((......--------.....)))).)))))))..-- ( -23.30) >consensus ACGGAGCACGCAUUGAUUGCAU_UCGGUAUUCUUCUAUUAUUUUAAGUAAUGGAAGGUACAC______CUGAAUAACUCU_AUCUAU_UUUUCAUAUCCUGAGUUCAUUUAAA__ .........(((.....)))......(((.(((((((((((.....)))))))))))))).........((((((((((.....................))))).))))).... (-14.04 = -14.84 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:56 2006