Locus 6319

Sequence ID 3R_DroMel_CAF1
Location 16,506,743 – 16,506,844
Length 101
Max. P 0.709552
window10309

overview

Window 9

Location 16,506,743 – 16,506,844
Length 101
Sequences 4
Columns 115
Reading direction forward
Mean pairwise identity 73.37
Mean single sequence MFE -31.77
Consensus MFE -17.33
Energy contribution -17.34
Covariance contribution 0.00
Combinations/Pair 1.25
Mean z-score -1.84
Structure conservation index 0.55
SVM decision value 0.37
SVM RNA-class probability 0.709552
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16506743 101 + 27905053
UCCAGCCAACCAACCAAC-------------CAGCCAUCCAGCUUUCCAGAAGCGAAAA-AAAGUCGUAACACGGCUGGAGUUGGACUGUUCUCGGUUGGAUGGUUCUAUUUAGA
...(((((.((((((...-------------(((((((((.(((((...))))).....-..(((((.....))))))))..))).))).....)))))).)))))......... ( -32.70)
>DroSec_CAF1 62568 106 + 1
-------AACCAACCAACCAGGCAGCUAU-CCAGGCAUCCAGCUAUCCAGAAGCGGAAA-AAACUCGUAACACGACUGGAGUUGGACUGUUCCCGGUUCGAUGGUUCUGGUUGGA
-------......(((((((((..(((((-(..(((.(((((...(((......)))..-....(((.....)))))))))))((((((....))))))))))))))))))))). ( -38.10)
>DroEre_CAF1 64631 96 + 1
UCCAGCCAACCAA-----------------CCAGCCAUCCAGCUAUUCAGAAGCGGAAA--AACUCGUAACACGACUGGGCUUGGACAUUUCCCGGCUGGAUGGGACUCGUUAUA
(((((((......-----------------..((((.(((.(((.......))))))..--...(((.....)))...)))).(((....))).))))))).............. ( -27.20)
>DroYak_CAF1 58104 107 + 1
UCCAGCCAACCAAA--------CAGCUAUACCAGCUAUCCAGCUAUUCAGAAGCGGAAAAAAACUGGUAACACGACUGGAGUUGGACUCUUCCCGGUGGGAUGCGUCCGGUUAUG
...((((..(((..--------......((((((...(((.(((.......))))))......)))))).......)))....((((.(.((((...)))).).))))))))... ( -29.06)
>consensus
UCCAGCCAACCAAC________________CCAGCCAUCCAGCUAUCCAGAAGCGGAAA_AAACUCGUAACACGACUGGAGUUGGACUGUUCCCGGUUGGAUGGGUCUGGUUAGA
..................................((((((((((.(((((..(.(...............).)..)))))...(((....))).))))))))))........... (-17.33 = -17.34 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:36 2006