Locus 6316

Sequence ID 3R_DroMel_CAF1
Location 16,500,287 – 16,500,393
Length 106
Max. P 0.606540
window10303

overview

Window 3

Location 16,500,287 – 16,500,393
Length 106
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 73.37
Mean single sequence MFE -33.48
Consensus MFE -14.54
Energy contribution -15.74
Covariance contribution 1.19
Combinations/Pair 1.14
Mean z-score -1.84
Structure conservation index 0.43
SVM decision value 0.15
SVM RNA-class probability 0.606540
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16500287 106 - 27905053
UGUCAGUUUAAGCCAAAAAUCCGGGCCCUAAGCGCUGGGCCAAAUGCCGCACA--CAACCACUGGCCAAAACAAUUCUGGCCAAAAACCACAAGGGGCAUCGAUU-GGU
...........(((((.......(((((........)))))..(((((.....--.......((((((.........))))))....((....)))))))...))-))) ( -32.60)
>DroPse_CAF1 56598 99 - 1
UGCCAGAUUGGGCCUGGGAUUGGGGCCCUGAGUGGAGGGCCAAAUGGCACAAUGUUACCC----------ACGGUUCUGGCCACCAGCCAUGGCCAUAAUGGAUUCGGU
.(((..((((((((((((.....((((((......))))))...((((.....)))))))----------).)))))((((((.......)))))).....)))..))) ( -38.80)
>DroSec_CAF1 56638 106 - 1
UGUCAGUUAAAGCCAAAAAUCCGGCCCCUAAGCGCUGGGCCAAAUGCCGCACA--CAACCACUGGCCAAAAAAAUUCUGGCCGAAAACCACAAGGGGCAUCGAUU-GCU
..........(((....((((..((((((..(.((..(((.....))))).).--.......((((((.........)))))).........))))))...))))-))) ( -28.50)
>DroSim_CAF1 60557 106 - 1
UGUCAGUUUAAGCCAAAAAUCCGGGCCCUAAGCGCUGGGCCAAAUGCCGCACA--CAACCACUGGCCAAAACAAUUCUGGCCGAAAACCACAAGGGGCAUCGAUU-GGU
...........(((((.......(((((........)))))..(((((.....--.......((((((.........))))))....((....)))))))...))-))) ( -31.90)
>DroEre_CAF1 57982 106 - 1
UGUCAGUUAAAGCCAAAAAUCCGGGCCCUAAGUGCUGGGCCAAAUGCCACACA--CAUAAACUGGCCAAAACAAUUCUGGCGGAAAACCACAAGGGGCAUCGAUU-GGU
..(((((..(.(((.....(((((((((........)))))....((((....--.......))))..............))))...((....))))).)..)))-)). ( -30.30)
>DroPer_CAF1 57186 99 - 1
UGCCAGAUUGGGCCUGGGAUUGGGGCCCUGAGUGGAGGGCCAAAUGGCACAAUGUUACCC----------ACGGUUCUGGCCACCAGCCAUGGCCAUAAUGGAUUCGGU
.(((..((((((((((((.....((((((......))))))...((((.....)))))))----------).)))))((((((.......)))))).....)))..))) ( -38.80)
>consensus
UGUCAGUUUAAGCCAAAAAUCCGGGCCCUAAGCGCUGGGCCAAAUGCCACACA__CAACCACUGGCCAAAACAAUUCUGGCCAAAAACCACAAGGGGCAUCGAUU_GGU
.(((((.................(((((........)))))....((((.............))))..........)))))............................ (-14.54 = -15.74 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:31 2006