| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,499,157 – 16,499,258 |
| Length | 101 |
| Max. P | 0.932706 |
| Location | 16,499,157 – 16,499,258 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 87.60 |
| Mean single sequence MFE | -26.02 |
| Consensus MFE | -21.89 |
| Energy contribution | -22.45 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.932706 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16499157 101 - 27905053 CACAUGCAGCUAUUCCCUGGUGGGGAUUCAAAGGCCACGCCCACAUAGCAAACCACCCAAC-------GCCCCCCACAGGGGCACUUUCACAUGGAACACACAAAAAC ..((((..(((((((((....)))))......(((...)))....))))............-------(((((.....))))).......)))).............. ( -26.80) >DroSec_CAF1 55504 98 - 1 CACAUGCAGUUAUUCCCUGAUGGGGAUUCAAAGGCCACGCCCACAUAGCAAACCACCCACC-------GCC-ACCACAGGGGCUCUUCCACACGGAACACACA--GAC ....(((.(..((((((....)))))).)...(((...)))......)))...........-------(((-.((...)))))..((((....))))......--... ( -20.10) >DroSim_CAF1 59422 99 - 1 CACAUGCAGCUAUUCCCUGAUGGGGAUUCAAAGGCCACGCCCACAUAGCAAACCACCCACC-------GCCCCCCACAGGGGCACUUCCACAUGGAACACACA--AAC ..((((..(((((((((....)))))......(((...)))....))))............-------(((((.....))))).......)))).........--... ( -26.80) >DroEre_CAF1 56833 106 - 1 CACAUGCAGCUAUUCCCUGCUGGGGAUUCAAAGGCCACGCCCACAAAGCCAGCCGCCCACCGCCCACCGCCCCGCACAGGGGCAUUUCGACAUGGAACACACA--AAC ..((((((((........))))(((.......(((...((.......))..)))........)))...(((((.....))))).......)))).........--... ( -30.36) >consensus CACAUGCAGCUAUUCCCUGAUGGGGAUUCAAAGGCCACGCCCACAUAGCAAACCACCCACC_______GCCCCCCACAGGGGCACUUCCACAUGGAACACACA__AAC ..((((..(((((((((....)))))).....(((...))).....)))...................(((((.....))))).......)))).............. (-21.89 = -22.45 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:28 2006