Locus 6313

Sequence ID 3R_DroMel_CAF1
Location 16,498,229 – 16,498,323
Length 94
Max. P 0.789176
window10299

overview

Window 9

Location 16,498,229 – 16,498,323
Length 94
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 74.01
Mean single sequence MFE -28.47
Consensus MFE -15.62
Energy contribution -15.73
Covariance contribution 0.12
Combinations/Pair 1.33
Mean z-score -1.69
Structure conservation index 0.55
SVM decision value 0.58
SVM RNA-class probability 0.789176
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16498229 94 - 27905053
GCUGUGACUGGAUCGAAAAUCCAAAUCGGUCAAAAC--C--CAGCGGGCAAGGAAGGCUUCUAACGAAG-CACUUCAAUCUCCCGUGUGUAGUAGCUUU
((((..((..((((((.........)))))).....--.--..(((((....(((((((((....))))-).)))).....)))))..))..))))... ( -32.80)
>DroGri_CAF1 68720 90 - 1
GCGAUUUCUACUUGAAAAGUCAGAGAUGGGAAAAAUAAUUGAAGCGGGCAAAUGAGAC---------GGCAGCUCAAAUCUCCCGUGUGUAGUCGUUUU
.(.(((((((((.....))).)))))).)..((((..((((..(((((....((((.(---------....))))).....)))))...))))..)))) ( -21.30)
>DroSec_CAF1 54872 94 - 1
GCUGUGACUGGAUCAAAAAUCCAAAUUGGACAAAAC--C--CAGCGGGCAAGGAAGGCUUCCUGCGAAA-CACUUCAAUCUCCCGUGUGUAGUCGCUUU
...(((((((.((......(((.....)))......--.--..(((((....(((((.(((....))).-).)))).....))))))).)))))))... ( -24.60)
>DroSim_CAF1 58509 94 - 1
GCUGUGACUGGAUCCAAAAUCCAAAUCGGUCAAAAC--C--CAGCGGGCAAGGAAGGCUUCCUGCGAAA-CACUUCAAUCUCCCGUGUGUAGUCGCUUU
...((((((((((.....)))).....(((....))--)--..(((((....(((((.(((....))).-).)))).....)))))....))))))... ( -24.10)
>DroEre_CAF1 55888 94 - 1
GCUGUGACUGGAUAAAAAAUCCAAAUAGGUCAAAAC--C--CAGCGGGCAAGGAAGGCUUCCUUGGAAG-CACUUCAAUCUCCCGUGUGUAGUCGCUUU
...((((((((((.....)))).....(((....))--)--..(((((....(((((((((....))))-).)))).....)))))....))))))... ( -32.90)
>DroAna_CAF1 51834 89 - 1
GUUGGGACUGGACCAGAGAUCCAGCUCGAGUGAAAA--U--CAGCGGGCAAGGAAGCCGUCAUCCGGCG--GCUUCAAUCUCCCGUGUGUAGU----UU
.(((((.(((((.......)))))))))).......--.--..(((((....(((((((((....))))--))))).....))))).......----.. ( -35.10)
>consensus
GCUGUGACUGGAUCAAAAAUCCAAAUCGGUCAAAAC__C__CAGCGGGCAAGGAAGGCUUCCUGCGAAG_CACUUCAAUCUCCCGUGUGUAGUCGCUUU
........(((((.....)))))....................(((((....((((.((((....))))...)))).....)))))............. (-15.62 = -15.73 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:27 2006