| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,496,125 – 16,496,221 |
| Length | 96 |
| Max. P | 0.985501 |
| Location | 16,496,125 – 16,496,221 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 90.92 |
| Mean single sequence MFE | -26.57 |
| Consensus MFE | -23.73 |
| Energy contribution | -23.78 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.89 |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.985501 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16496125 96 + 27905053 CCAUCAGCUGCCAUGGAA--CUCCGUGCGAAAUCCCGUUGAUAAGCCGCUGACAUGUUGCAUGUCGGACAGUUUAUUCAACCGUUUUUCCACCACUUU----- .........((.((((..--..))))))((((..(.((((((((((.(((((((((...)))))))).).))))).))))).)..)))).........----- ( -28.20) >DroSec_CAF1 52827 96 + 1 CCAUCAGCUGCCAUGGAA--CUCCGUGCGAAAUCCCGUUGAUAAGCCGCUGACAUGUUGCAUGUCGGACAGUUUAUUCAACCGUUUUUCCACCACUUU----- .........((.((((..--..))))))((((..(.((((((((((.(((((((((...)))))))).).))))).))))).)..)))).........----- ( -28.20) >DroSim_CAF1 56471 96 + 1 CCAUCAGCUGCCAUGGAA--CUCCGUGCGAAAUCCCGUUGAUAAGCCGCUGACAUGUUGCAUGUCGGACAGUUUAUUCAACCGUUUUUCCACCACUUU----- .........((.((((..--..))))))((((..(.((((((((((.(((((((((...)))))))).).))))).))))).)..)))).........----- ( -28.20) >DroEre_CAF1 53737 96 + 1 CCAUCGGCUGCCAUCGAA--CUCGGAGCGAAAUCCCGUUGAUAAGCCGUUGACAUGUUGCAUGUCGGACAGUUUAUUCAACCGUUUUUCCACCACUUU----- ...((((......)))).--...((.(.((((..(.((((((((((.(((((((((...)))))).))).))))).))))).)..))))).)).....----- ( -25.10) >DroYak_CAF1 55122 96 + 1 CCAUCAGCUGCCAUCGAA--CUCAGUGCGAAAUCCCGUUGAUAAGCCGUUGACAUGUUGCAUGUCAGACAGUUUAUUCAACCGUUUUUCCACCACUUU----- ..................--....(((.((((..(.((((((((((.(((((((((...))))))).)).))))).))))).)..)))))))......----- ( -24.20) >DroAna_CAF1 49894 103 + 1 CCAUCAGUUGCCGUCAAAUGCUGUGUGCGAAAUCCCGUUGAUAAGCCGUUGACAUGUUGCAUGUCCGACAGUUUAUUUAACCGCUUUUCCACACCCAUCCACA ............((...(((..(((((.((((..(.((((((((((.(((((((((...))))).)))).))))).))))).)..))))))))).)))..)). ( -25.50) >consensus CCAUCAGCUGCCAUCGAA__CUCCGUGCGAAAUCCCGUUGAUAAGCCGCUGACAUGUUGCAUGUCGGACAGUUUAUUCAACCGUUUUUCCACCACUUU_____ .........((.(((((....)))))))((((..(.((((((((((.(((((((((...)))))))).).))))).))))).)..)))).............. (-23.73 = -23.78 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:26 2006