| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,486,920 – 16,487,015 |
| Length | 95 |
| Max. P | 0.520778 |
| Location | 16,486,920 – 16,487,015 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 73.36 |
| Mean single sequence MFE | -19.88 |
| Consensus MFE | -14.53 |
| Energy contribution | -14.48 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.28 |
| Mean z-score | -0.69 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520778 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16486920 95 - 27905053 AAA-C--------------ACAAGAGGGGAACAAC--------GGCAAUAGGCAACACGAAUGGCUCGAAUGGCACUUGUGGGUGCAAUUGUAAUUAUCCUAAUUUAUGUUGUCUGCU .((-(--------------(.(((..((((.....--------.(((((..(((.(((((.((.(......).)).)))))..))).))))).....))))..))).))))....... ( -22.80) >DroSec_CAF1 42860 95 - 1 AAA-C--------------ACAAGAGGGGAAAAUG--------GGCAGUAGGCAACACAAAUGGCUCGAAUGGCACUUGUGGGUGCAAUUGUAAUUAUCCUAAUUUAUGUUGUCUGCU .((-(--------------(.(((..((((.(((.--------.(((((..(((.(((((.((.(......).)).)))))..))).))))).))).))))..))).))))....... ( -24.90) >DroSim_CAF1 44155 81 - 1 AAA-C--------------AC----------------------GGCAAUAGGCAACACAAAUGGCUCGAAUGGCACUUGUGGGUGCAAUUGUAAUUAUCCUAAUUUAUGUUGUCUGCU ...-.--------------..----------------------((((...(((((((.((((......(((.(((.((((....)))).))).)))......)))).))))))))))) ( -18.10) >DroEre_CAF1 44859 91 - 1 AGU-G--------------GUUAAA----AAAAAA--------GCCAAAAGGCAACACAAAUGGCUUGAAUGGCACUUGUGGGUGCAAUUGUAAUUAUCCUAAUUUAUGUUGCAUGGU ...-.--------------......----......--------(((....)))..(((((.((.(......).)).))))).(((((((...(((((...)))))...)))))))... ( -20.60) >DroYak_CAF1 45811 89 - 1 AAA-U--------------GCUAAA----AAAACG--------UCCG--AGGCAACAAAAAUGGCUCGAAUGGCACUUGUGGGUGCAAUUGUAAUUAUCCUAAUUUAUGUUUUCUGGC ...-.--------------((((..----((((((--------(.((--((.((.......)).))))....(((((....)))))....................))))))).)))) ( -19.00) >DroAna_CAF1 40961 118 - 1 AAAACUAACAAAUUUAAAAAUAAAAAAGUAACAAAUAAGAGACAACAAACUGCGACAGACCGAGCUCGAAUGGCACUUGUGGGUGCAAUUGUAAUUAUCCUAAUUUAUGUUGUGUGGU .......................................(.((((((........((...((....))..))(((((....))))).....................)))))).)... ( -13.90) >consensus AAA_C______________ACAAAA____AAAAAA________GGCAAUAGGCAACACAAAUGGCUCGAAUGGCACUUGUGGGUGCAAUUGUAAUUAUCCUAAUUUAUGUUGUCUGCU ...........................................((((...(((((((.((((......(((.(((.((((....)))).))).)))......)))).))))))))))) (-14.53 = -14.48 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:23 2006