Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,325,834 – 2,325,942 |
Length | 108 |
Max. P | 0.638717 |
Location | 2,325,834 – 2,325,942 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 89.81 |
Mean single sequence MFE | -24.38 |
Consensus MFE | -17.73 |
Energy contribution | -19.48 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.08 |
Mean z-score | -1.81 |
Structure conservation index | 0.73 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2325834 108 - 27905053 UCAUUUUGCCCAUAUAUUUAUGGAAGCAAACUGUACGAGGACAAACACUGCCAAAUAUAUUCAUGAAUCAUGGUAAAUUUGAAAGUGUUUUUGUAUGGAGCCUUGAAC (((.((((((((((....)))))..)))))((((((((....(((((((..(((((.(((.((((...))))))).)))))..))))))))))))))).....))).. ( -27.80) >DroSec_CAF1 31606 108 - 1 UCAUUUUGCCCAUAUAUUUAUGGAAGCAAACUGUACGAGGACAAACACUGCCAAAUAUAUUCAAGCAUCAUGGUAAAUUUGAAAGUGUUUUUGUAUGGAGCCUUGAAC (((.((((((((((....)))))..)))))((((((((....(((((((..(((((.(((.((.......))))).)))))..))))))))))))))).....))).. ( -24.70) >DroSim_CAF1 31801 108 - 1 UCAUUUUGCCCAUAUAUUUAUGGGAGCAAACUGUACGAGGACAAACAUUGCCAAAUAUAUUCAUGAAUCAUGGUAAAUUUGAAAGUGUUUUUGUAUGGAGCCUUGAAC (((.....((((((....)))))).((...(((((((((((((....((..(((((.(((.((((...))))))).))))).)).))))))))))))).))..))).. ( -26.50) >DroEre_CAF1 37097 101 - 1 -------GCUUCUACAUUUAUGAAAGCAAACUGCACGAGGACAAACACUGCCAAAUAUAUUCAUGAAUCUUGGUAAAUUUUUAAGUAUUUUUGUAAGGAGCCUUGAAC -------(((((((((((((((((.((.....))....((.((.....)))).......)))))))).(((((.......)))))......))).))))))....... ( -18.50) >consensus UCAUUUUGCCCAUAUAUUUAUGGAAGCAAACUGUACGAGGACAAACACUGCCAAAUAUAUUCAUGAAUCAUGGUAAAUUUGAAAGUGUUUUUGUAUGGAGCCUUGAAC ....((((((((((....)))))..)))))((((((((....(((((((..(((((.(((.((((...))))))).)))))..))))))))))))))).......... (-17.73 = -19.48 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:55 2006