Locus 6308

Sequence ID 3R_DroMel_CAF1
Location 16,483,275 – 16,483,366
Length 91
Max. P 0.799182
window10290

overview

Window 0

Location 16,483,275 – 16,483,366
Length 91
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 85.66
Mean single sequence MFE -25.17
Consensus MFE -20.52
Energy contribution -20.48
Covariance contribution -0.04
Combinations/Pair 1.12
Mean z-score -1.76
Structure conservation index 0.82
SVM decision value 0.61
SVM RNA-class probability 0.799182
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16483275 91 - 27905053
GCAGAGGUCAAUGCGGAGGUGCUUGGGUGGCAGCUGUGCACACGAAGAAAAUAUGAGGUGGUUGUUAAAUUGACUAAUGGA--------AGCUGUUGAC
.((..((((((((((.((.((((.....)))).)).))).(((..............)))........)))))))..))..--------.......... ( -22.44)
>DroSec_CAF1 39235 99 - 1
ACAGAGGUCAAUGCGGAGGUGCUUGGGUGGCAGCUGUGCACAUGAAGAAAAUAUGAGGUGGUUGUUAAAUUGUCUAAUGGAGUAAUAAUAACUGUUGAC
......(((((((((.((.((((.....)))).)).)))....................((((((((.....((....)).....)))))))))))))) ( -22.90)
>DroSim_CAF1 40528 99 - 1
ACAGAGGUCAAUGCGGAGGUGCUUGGGUGGCAUCUGUGCACAUGAAGAAAAUAUGAGGUGGUUGUUAAAUUGUCUAAUGGAGUAAUAAUAACUGUUGAC
......(((((((((.(((((((.....))))))).)))....................((((((((.....((....)).....)))))))))))))) ( -24.80)
>DroEre_CAF1 41345 96 - 1
GCAGAGGUCAAUGCGGAGGUGCUUGGGUGGCAGCUGUGCACACGAAGAAUAUAUGAGGUAGAGGAAACUUUUCCUUAUGGAAUAAUAUU---UGUUGAC
......((((.((((.((.((((.....)))).)).)))).(((((.....(((((((.((((....)))).)))))))........))---))))))) ( -30.82)
>DroYak_CAF1 42240 99 - 1
GCAGAGGUCAAUGCGGAGGUGCUUGGGUGGCAGCUGUGCACGCGAAGAAAAUAUAAGGUGGAUGAAACAUUUCCUUAUGGAAUAAUAUUAAAUGUUGAC
......(((((((((.((.((((.....)))).)).)))............(((((((.(((((...))))))))))))..............)))))) ( -24.90)
>consensus
GCAGAGGUCAAUGCGGAGGUGCUUGGGUGGCAGCUGUGCACACGAAGAAAAUAUGAGGUGGUUGUUAAAUUGCCUAAUGGAAUAAUAAUAACUGUUGAC
......(((((((((.((.((((.....)))).)).)))............(((.(((..(((....)))..))).)))..............)))))) (-20.52 = -20.48 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:18 2006