Locus 6306

Sequence ID 3R_DroMel_CAF1
Location 16,465,521 – 16,465,637
Length 116
Max. P 0.500000
window10287

overview

Window 7

Location 16,465,521 – 16,465,637
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.88
Mean single sequence MFE -38.17
Consensus MFE -19.44
Energy contribution -19.67
Covariance contribution 0.23
Combinations/Pair 1.35
Mean z-score -1.73
Structure conservation index 0.51
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16465521 116 - 27905053
GGGAUCUUUUGCAGUAGCAUGGGCUCCUUGGAACCAGGGGAUCGCAGUUGCAUGGCGGUGUCGUAAAUAAUGUUGGCCAAUAAGUGGAUAUUGUGUAGGGUCCUAAAG----UUCAAAGC
((((((((.((((((((((...((((((((....))))))...))...))).((((.(...(((.....))).).)))).........))))))).))))))))....----........ ( -34.70)
>DroVir_CAF1 23149 116 - 1
GGUAUCUUCUGCAGCAACAUCGGCUCCUUGGAGCCGGGCGAUCGCAGCUGCAUGGCUGUGUCGUAGAUGAUGUUGGCCAACAAAUGGAUAUUGUGCAGCGUACUAGAA----AAUAGAGA
(((((...(((((.((((((((((((....)))))..((((.(((((((....)))))))))))....))))))).(((.....)))......))))).)))))....----........ ( -45.70)
>DroGri_CAF1 26882 116 - 1
GGGAUCUUUUGCAGCAGCAAAGGAUCCUUGGAGCCAGGCGAACGCAACUGCAUUGCCGUAUCAUAGAUGAUGUUGGCCAGCAAAUGGAUGUUGUGCAGCGUGCUUAGG----GAUAUGGA
((((((((((((....)))))))))))).....((.(((((..((....)).)))))(((((..((...((((((..(((((......)))))..)))))).))....----))))))). ( -40.70)
>DroWil_CAF1 24186 115 - 1
GGAAUCUUUUGUAGCAACAUGGGCUCCUUGGAGCCCGGAGAUCGCAAUUGCAUGGCAGUGUCGUAGAUAAUAUUUGCCAGUAAAUGAAUGUUGUGCAAAGUGCUAAGA----AUAAA-AC
......(((((((.((((((((((((....))))))........((.((((.(((((((((........))).)))))))))).)).)))))))))))))........----.....-.. ( -34.90)
>DroMoj_CAF1 21831 116 - 1
GGUAUCUUCUGCAGCAGCAUCGGUUCCUUGGAGCCCGGCGAGCGCAACUGCAUGGCCGUGUCAUAGAUAAUGUUGGCCAGCAAAUGGAUGUUGUGUAGAGUGCUAUAG----AACAGUCA
(((((..((((((.((((((((((((....)))))..((....))...(((.((((((...(((.....))).)))))))))....))))))))))))))))))....----........ ( -41.90)
>DroAna_CAF1 19979 120 - 1
GGAAUCUUUUGAAGCAGCAUGGGUUCCUUGGACCCAGGAGAUCUCAACUGCAUCGCCGUAUCAUAGAUUAUGUUGGCCAGCAAGUGAAUGUUAUGUAGGGUCCUGAAAGAGGGUCAUAUC
(((((((..((......)).)))))))..((((((..((.((.(((..(((...((((...((((...)))).))))..)))..))))).)).....))))))................. ( -31.10)
>consensus
GGAAUCUUUUGCAGCAGCAUGGGCUCCUUGGAGCCAGGCGAUCGCAACUGCAUGGCCGUGUCAUAGAUAAUGUUGGCCAGCAAAUGGAUGUUGUGCAGAGUGCUAAAA____AACAAAGA
......(((((((.((((((.((.((....)).)).........((..(((.((((((...(((.....))).)))))))))..)).))))))))))))).................... (-19.44 = -19.67 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:16 2006