Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,460,689 – 16,460,780 |
Length | 91 |
Max. P | 0.991194 |
Location | 16,460,689 – 16,460,780 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 68.86 |
Mean single sequence MFE | -14.31 |
Consensus MFE | -7.46 |
Energy contribution | -7.50 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.08 |
Mean z-score | -2.25 |
Structure conservation index | 0.52 |
SVM decision value | 2.25 |
SVM RNA-class probability | 0.991194 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16460689 91 - 27905053 CUUGUCAACUCAACAACAGUAAUAUCGAUAUUAUUUAAAUCAGUUAAGCAG--UGAAUCACUAUCGACUGUUACUUUUUGUUGAAUUUUAU-UU .........(((((((.(((((((((((((..(((((...(......)...--)))))...)))))).)))))))..))))))).......-.. ( -18.20) >DroSec_CAF1 16659 86 - 1 CUUGCCAACUUUCCAACAGUAAUAUCGAUAUUAUUAAAAUCAGUUAAGCAGUUUAAAUCACUAUCGACUGUUAUUUGUUUUU-------AU-UA ..............((((((((((((((((..(((.((((..........)))).)))...)))))).))))).)))))...-------..-.. ( -8.30) >DroSim_CAF1 17541 86 - 1 CUUGCCAACUUUCCAACAGUAAUAUCGAUAUUAUUAAAAUCAGUUAAGCAGCUUAAAUCACUAUCGACUGUUACUUGUUGUU-------AU-UA .............(((((((((((((((((...........((((....))))........)))))).)))))).)))))..-------..-.. ( -14.01) >DroEre_CAF1 16875 76 - 1 CUUGCAGAUUUCCCAACAGUAAUAUCGAUAUUG------------------CUUAACUCACUAUCGACUGUUACUUAUUUUUGCAUUUUAUUUU ..((((((.........(((((((((((((.((------------------.......)).)))))).)))))))....))))))......... ( -14.62) >DroYak_CAF1 17675 76 - 1 CUAGCAGAUUUGCCAACAGUAAUAUCGAUAAUG------------------CUUACAUUUUGAUCGACUGUUACUUAUAUUUGCACUUAAUUUA ...((((((.....((((((...(((((.((((------------------....)))))))))..))))))......)))))).......... ( -16.40) >consensus CUUGCCAACUUUCCAACAGUAAUAUCGAUAUUAUU_AAAUCAGUUAAGCAGCUUAAAUCACUAUCGACUGUUACUUAUUUUUG_A_UU_AU_UA .................(((((((((((((...............................)))))).)))))))................... ( -7.46 = -7.50 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:15 2006