Locus 6301

Sequence ID 3R_DroMel_CAF1
Location 16,450,043 – 16,450,146
Length 103
Max. P 0.749730
window10280

overview

Window 0

Location 16,450,043 – 16,450,146
Length 103
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 80.64
Mean single sequence MFE -32.22
Consensus MFE -18.60
Energy contribution -19.13
Covariance contribution 0.53
Combinations/Pair 1.50
Mean z-score -2.16
Structure conservation index 0.58
SVM decision value 0.47
SVM RNA-class probability 0.749730
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16450043 103 + 27905053
ACCAGCGAGGAUCAGCAGCCCAUUUUUGCGACGGCAAUCAAGGCGGAAAAUGGAGACGAUACUCUUAAAGCAGAAGCUGCAGAGGCCGUUGAAAUUGAAAAUG---
..(((((.(..((.(((((....((((((..((.(......).))......((((......))))....))))))))))).))..))))))............--- ( -26.30)
>DroSec_CAF1 6122 103 + 1
ACCAGCGAGGAUGAGCAGCCCAUUUUUGCGACGGCAGUCAAGGCGGAAAAUGGAGACGAUACUCUUAAAGCGGAAGCUGCAGAGGCCGUUGAAAUUGAAAAUG---
....(((((((((.......)))))))))((((((.((....))......((....))...((((...(((....)))..)))))))))).............--- ( -32.20)
>DroSim_CAF1 6169 103 + 1
ACCAGCGAGGAUCAGCAGCCGAUUUUCGCGAUGGCAGUCAAGGCGGAAAAUGGAGACGAUACUCUUAAAGCGGAAGCUGCAGAGGCCGUUGAAAUUGAAAAUG---
.((((((((((((.......)))))))))..)))((((...(((((....((....))...((((...(((....)))..)))).)))))...))))......--- ( -33.90)
>DroEre_CAF1 6044 103 + 1
UCCAGCGAGGAUCACCAGCCCAUUUUCGCGACGGUAGUCAAGGCGGAAAAUGGUGACGAUACUCUAAAAGCGGAAGCUUCAGAGGCCGCUGAAACUGAAAAUG---
..(((((....((((((.....((((((((((....)))...))))))).)))))).....((((..((((....)))).))))..)))))............--- ( -35.30)
>DroYak_CAF1 6769 97 + 1
UCCAGUGAGAAUCAGCUGCCCAUUUUCGCGACGGUAGUCAAGGCGGAAAAUGGCGACGAUACUCUUAAAGCGGAGGCU------GUCGUUGAAACUGAAAAUA---
..((((.....(((((.(((..((((((((((....)))...)))))))..)))((((...((((......))))..)------)))))))).))))......--- ( -29.50)
>DroPer_CAF1 5621 103 + 1
AAUAGCGAAGAUCUGCAGCCGAUCUUCGAGUUG---GUCAAGGCUGAAAAUGGCGAUGAGACACUAAAGGCCGAAGGCGGAGAAGCUGCAGAAGGCGACACUGCCA
...........((((((((...((((((..(((---(((...(((......)))(......)......))))))...)))))).)))))))).((((....)))). ( -36.10)
>consensus
ACCAGCGAGGAUCAGCAGCCCAUUUUCGCGACGGCAGUCAAGGCGGAAAAUGGAGACGAUACUCUUAAAGCGGAAGCUGCAGAGGCCGUUGAAAUUGAAAAUG___
....((((((((.........)))))))).....((((...(((((....((....))...((((...(((....)))..)))).)))))...))))......... (-18.60 = -19.13 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:09 2006