Locus 6300

Sequence ID 3R_DroMel_CAF1
Location 16,448,830 – 16,448,925
Length 95
Max. P 0.512733
window10279

overview

Window 9

Location 16,448,830 – 16,448,925
Length 95
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 79.13
Mean single sequence MFE -37.11
Consensus MFE -22.93
Energy contribution -24.43
Covariance contribution 1.51
Combinations/Pair 1.29
Mean z-score -1.39
Structure conservation index 0.62
SVM decision value -0.04
SVM RNA-class probability 0.512733
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16448830 95 - 27905053
--UUGCUUCCCUUGCCGAUCUUCGCUGUUCCCGCUGCCGCCGCUACUAC---------UGCAGUGGUGG--GCAGUGAGCCUGUUGCAGCUCCGCCCAAGGAACUGUA
--..((.......)).....(((((((((((((((((.(.........)---------.))))))).))--)))))))).....(((((.(((......))).))))) ( -33.40)
>DroSec_CAF1 4872 95 - 1
--UUGCUUCCCUUGCCGAUCUUCGCUGUUCCCGCUGCCGCCGCUACUGC---------UGCAGUGGUGG--GCAGUGAGCCUGUUGCAGCUCCGCCCAAGGAGCUGUA
--..((.......)).....(((((((((((((((((.((.......))---------.))))))).))--)))))))).....(((((((((......))))))))) ( -43.60)
>DroSim_CAF1 4932 95 - 1
--UUGCUUCCCUUGCCGAUCUUCGCUGUUCCCGCUGCCGCCGCUACUGC---------UGCAGUGGUGG--GCAGUGAGCCUGUUGCAGCUCCGCCCAAGGAACUGUA
--..((.......)).....(((((((((((((((((.((.......))---------.))))))).))--)))))))).....(((((.(((......))).))))) ( -37.00)
>DroEre_CAF1 4854 101 - 1
--UGGCUUCCCUUGCCGAUCUUCGCCGUUCCCGCUGCCGACGCUACUGCUGCU---GCUGCAGUGGUAG--GCAGUGAGCCUGUUGCAGCUCCGCCCAAGGAACUGUA
--.((((......(.((.....)).).....(((((((...((((((((....---...)))))))).)--))))))))))...(((((.(((......))).))))) ( -39.80)
>DroYak_CAF1 5580 104 - 1
--UUGCUUCCCUUGCCAAUCUUCGUCGUUCCUGUUGCCGCCGCUACUGCUGCUGAUGCUGCAGUGGUGG--GCAGUGAGCCUGUUGCAUCUCCGCCCAAGGAACUGUA
--..((.......))...........((((((.........((((((((.((....)).))))))))((--((.(.((((.....)).)).).)))).)))))).... ( -34.80)
>DroPer_CAF1 4896 91 - 1
UGCUGCCACCCUUCCCGCUCUUCAACGAUCCUGUGGGCGCCAUGGAUGC---------GGCGGCGGUGGCGGCACUCGGC--------ACACUGCUUAAGGAACUGUA
((((((((((...(((((..............)))))((((........---------))))..))))))))))...(((--------.....)))............ ( -34.04)
>consensus
__UUGCUUCCCUUGCCGAUCUUCGCCGUUCCCGCUGCCGCCGCUACUGC_________UGCAGUGGUGG__GCAGUGAGCCUGUUGCAGCUCCGCCCAAGGAACUGUA
.......................((.(((((.(((((..((((((((((.((....)).))))))))))..)))))((((........)))).......))))).)). (-22.93 = -24.43 +   1.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:08 2006