Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,325,137 – 2,325,231 |
Length | 94 |
Max. P | 0.610676 |
Location | 2,325,137 – 2,325,231 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 91.38 |
Mean single sequence MFE | -21.00 |
Consensus MFE | -18.10 |
Energy contribution | -18.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.19 |
Mean z-score | -1.27 |
Structure conservation index | 0.86 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610676 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2325137 94 - 27905053 AAACACAAUAAAUCAUAAAAAGGAGUCUGCCAUUGGGUUUAUUGAUAUUGCAUGCCCUUGCUAUUGUAUUAUGAUUAUACAGUCGCGGAAGUAA .....(((((((((....((.((......)).)).)))))))))........(((..((((.(((((((.......))))))).))))..))). ( -19.00) >DroSec_CAF1 30919 94 - 1 AAACACAAUAAAUCAUAAAAAGGAGUCUGCCAUUGGGUUUAUUGAUAUUGCAUGCCCUUGCUAUUGUACUAUGAUUAUACAGUCGCGGCGGCAA .....(((((((((....((.((......)).)).)))))))))........((((.((((.((((((.((....)))))))).)))).)))). ( -23.10) >DroSim_CAF1 31109 94 - 1 AAACACAAUAAAUCAUAAAAAGGAGUCUGCCAUUGGGUUUAUUGAUAUUGCAUGCCCUUGCUAUUGUAUUAUGAUUAUACAGUCGCGGCGGCAA .....(((((((((....((.((......)).)).)))))))))........((((.((((.(((((((.......))))))).)))).)))). ( -25.00) >DroEre_CAF1 36429 94 - 1 AAACACAAUAAAUCAUAAAAGGGAGUCUGCCAUUGGGUUUAUUGAUAUUGCAUGUCGCUGUUUCUGUAUUAUGAUUAUACACUCGCGGCAACGA .....(((((((((...((.((.......)).)).)))))))))........(((.(((((...(((((.......)))))...))))).))). ( -19.80) >DroYak_CAF1 30648 93 - 1 AAACACAAUAAAUCAUAAAAGGGAGUCUGCCAUUGGGUUUAUUGAUAUUGCAUGUCCUUGCUU-UGUAUUAUGUUUUUACAGUCGCGGAAACGA ((((((((((((((...((.((.......)).)).)))))))))(((..(((......)))..-)))....))))).........((....)). ( -18.10) >consensus AAACACAAUAAAUCAUAAAAAGGAGUCUGCCAUUGGGUUUAUUGAUAUUGCAUGCCCUUGCUAUUGUAUUAUGAUUAUACAGUCGCGGCAGCAA .....(((((((((....((.((......)).)).)))))))))........(((..((((.(((((((.......))))))).))))..))). (-18.10 = -18.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:53 2006