Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 376,218 – 376,331 |
Length | 113 |
Max. P | 0.638924 |
Location | 376,218 – 376,331 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 85.76 |
Mean single sequence MFE | -27.55 |
Consensus MFE | -20.11 |
Energy contribution | -19.93 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.24 |
Mean z-score | -1.60 |
Structure conservation index | 0.73 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 376218 113 + 27905053 AAAGUAUCCUGGUGCCAGAAUAAUUGGCGUACGUUGCAUAACGUUUUGCAGUUUUGAAGCUGACCUCAAGAAAUUGUUAUCUUUGAAAGAAUUUGAUGCUAAGAACUUUCAAA- (((((.((.((((..((((.......(((.(((((....)))))..)))..(((..(((.((((...((....)))))).)))..)))...))))..)))).)))))))....- ( -21.80) >DroSec_CAF1 51047 113 + 1 AAAGUAUCUUGGUGCCAGAAUAAUUGGCGUACAUUGCAUAACGUUUUGCAGUUUUGAAGCUGACCUCAAGGAAUUGUUAUCUUUGAGAGAAUUUGAUGCCAAGAACUUUUAAA- (((((.(((((((..((((....(..((....((((((........))))))......))..).((((((((.......))))))))....))))..))))))))))))....- ( -33.40) >DroSim_CAF1 51230 113 + 1 AAAGUAUCUUGGUGCCAGAAUAAUUGGCGUACAUUGCAUAACGUUUUGCAGUUUUGAAGCUGACCUCAAGAAAUUGUUAUCUUUGAGAGAAUUUGAUGCCAAGAACUUUUAAA- (((((.(((((((..((((....(..((....((((((........))))))......))..).(((((((........)).)))))....))))..))))))))))))....- ( -29.30) >DroEre_CAF1 38310 114 + 1 AAAGCUUCCUGGUGCCAGAAUAUCUGGCCUACAUUGCGUAACACUUUCUAGUUUUGAAGCUGACCGGAACAAUUUUUUAUCUUUGUAGUUACUUGAUGCUAAGGUCUUGCAAGC ...((..(((((.(((((.....))))))).(((((.(((((....((..(((........)))..))((((..........)))).))))).)))))...)))....)).... ( -25.70) >consensus AAAGUAUCCUGGUGCCAGAAUAAUUGGCGUACAUUGCAUAACGUUUUGCAGUUUUGAAGCUGACCUCAAGAAAUUGUUAUCUUUGAAAGAAUUUGAUGCCAAGAACUUUCAAA_ .((((.((((((((((((.....)))))...((..(.(((((((((((..(((........)))..)))))...)))))))..))............)))))))))))...... (-20.11 = -19.93 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:02 2006