Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,445,070 – 16,445,181 |
Length | 111 |
Max. P | 0.973971 |
Location | 16,445,070 – 16,445,181 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.43 |
Mean single sequence MFE | -40.19 |
Consensus MFE | -23.36 |
Energy contribution | -24.36 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.19 |
Mean z-score | -2.49 |
Structure conservation index | 0.58 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.973971 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16445070 111 + 27905053 CAAAGCACUUUGAUCCCAUGGCCGUUGCGGCUGCAGCCGCCAAUCUUCAAAUCCAAGGCCUGAUGCAAUCGCAGGCAGUGGCUGCCGCCGUCGCCGCCAAUCAGCAGA---CUC------ .......(((((((....((((.((.(((((.((((((((....(((.......)))(((((.((....))))))).)))))))).))))).)).))))))))).)).---...------ ( -44.00) >DroVir_CAF1 1167 111 + 1 CCAAACACUUUGAUCCAAUGGCAGUUGCCGCAGCUGCAGCCAAUUUGCAAAUUCAAGGCAUGAUGCAGUCGCAAGCUGUGGCCGCGGCUGUGGCCUCCAAUCAACAGC---AAC------ .........(((((....(((.((..(((((((((((.(((....(((.........)))....((((.(....)))))))).)))))))))))))))))))))....---...------ ( -41.00) >DroWil_CAF1 1120 117 + 1 CCAAACACUUUGAUCCCAUGGCUGUUGCUGCUGCAGCAGCUAAUCUGCAAAUUCAAGGCCUAAUGCAGUCCCAAGCGGUAGCCGCUGCUGUGGCAGCGAAUCAACAAC---AGCAACAAC ....................(((((((((((..(((((((....(((((..............)))))......((....)).)))))))..)))))(......))))---)))...... ( -40.04) >DroMoj_CAF1 1038 111 + 1 CCAAGCAUUUUGACCCAAUGGCUGUUGCAGCAGCAGCUGCCAAUUUGCAAAUUCAAGGCAUGAUGCAGUCACAAGCGGUGGCUGCAGCUGUCGCCUCUAAUCAGCAAC---AGC------ ....((............((((.(((((....))))).))))..((((..(((..(((((((.(((((((((.....)))))))))..))).))))..)))..)))).---.))------ ( -39.30) >DroAna_CAF1 1017 114 + 1 CCAAACACUUUGAUCCAAUGGCCGUGGCAGCUGCUGCUGCCAAUCUCCAGAUUCAGGGUCUCAUGCAAUCCCAAGCAGUGGCCGCCGCCGUGGCAGCCAACCAGCAACAACCUU------ ......(((((((.....(((...(((((((....)))))))....)))...)))))))...............((..((((.(((.....))).))))....)).........------ ( -36.10) >DroPer_CAF1 1162 111 + 1 CUAAGCACUUUGAUCCCAUGGCCGUGGCCGCAGCAGCAGCCAAUUUACAGAUCCAGGGACUAAUGCAAUCGCAGGCAGUGGCCGCUGCCGUGGCCGCAAAUCAGCAGC---CGA------ ....((..((((...(((((((.((((((((....)).(((.......((.((....))))..(((....))))))...)))))).)))))))...))))...))...---...------ ( -40.70) >consensus CCAAACACUUUGAUCCAAUGGCCGUUGCAGCAGCAGCAGCCAAUCUGCAAAUUCAAGGCCUGAUGCAAUCGCAAGCAGUGGCCGCCGCCGUGGCCGCCAAUCAGCAAC___AGC______ .......((((((.....((((.(((((....))))).))))..........)))))).....(((........)))((((((((....))))))))....................... (-23.36 = -24.36 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:04 2006