| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,440,004 – 16,440,124 |
| Length | 120 |
| Max. P | 0.661295 |
| Location | 16,440,004 – 16,440,124 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.06 |
| Mean single sequence MFE | -45.65 |
| Consensus MFE | -29.02 |
| Energy contribution | -30.00 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.661295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16440004 120 + 27905053 AUUCCAUAAGACUGCUCAUCUGACAGAGGUCCGCCUUCCGCCUUCUUCUCAAAUUCUGGAGACGGAAGACAGCAGCUGCAAAGGCCAGCAAAAGGAGCAGCGGCAGCGCCACCUCCAAGA ..................(((....(((((.(((((((((.((((............)))).))))))...((.(((((.....((.......)).))))).)).)))..)))))..))) ( -34.80) >DroPse_CAF1 37363 120 + 1 ACUCCCACAGGCUGCUGGCCUGACAGAGCUCCGCAUGCCGUCUGCGCCGCAGGUUCUGCAAGCGGAAGGCCGCUGCCGAGAAGGCCAGCAGCAGGAGCAGUGGCAGAGCCACUUCCAGGA ....((....(((((((((((.......(((.(((.(((.(((((...((((...))))..))))).)))...))).))).))))))))))).(((..((((((...))))))))).)). ( -60.20) >DroSec_CAF1 35931 120 + 1 AUUCCAUAAGACUGCUCAUCUGACAGAGGUCCGCCUUUCGUCUUCUUCUCAAAUUCUGGAGACGCAAGGCAGCAGCUGCAAAGGCCAGCAAAAGGAGCAGCGGCAGCGCCACCUCCAGUA ..........((((.((....))..(((((..(((((.(((((((............))))))).))))).((.(((((....(((........).))....))))))).))))))))). ( -38.50) >DroYak_CAF1 40035 120 + 1 ACUCUAGAAGACUGCUCAUUUGAUAGAGGUCCGCCUUUCUCCUUCUUCUCAGAUUCUGGAGGCGGAAGACUGCAGCUGCAAAGGCCAGCAAAAGGAGCAGAGGCAGCGCCACCUCUAGGA ..((((((.(.((((((...((.(((...(((((((((.....(((....)))....)))))))))...)))))(((((....).)))).....)))))).(((...))).).)))))). ( -41.20) >DroAna_CAF1 29934 120 + 1 AUUCCAUCAGGCUGUUCAUCUGACAGAGGUCUGUCUUUCGCCGUCUUCGCAGAUUUUGGAGGCGGAAGGCAGCAGCCGCAAGGGCCAGCAGCAAGAGCAGGGGCAGCGCCACUUCCAGGA ..(((.((..((((((..((.....))(((((((((((((((.(((...........)))))))))))))))...((....)))))))))))..))(.((((((...))).))).).))) ( -42.60) >DroPer_CAF1 37236 120 + 1 ACUCCCACAGACUGCUGGCCUGACAGAGCUCCGCAUGCCGUCUGCGCCGCAGGUUCUGCAAGCGGAAGGCCGCUGCCGAGAAGGCCAGCAGCAGGAGCAGUGGCAGAGCCACUUCCAGGA ....((...(.((((((((((.......(((.(((.(((.(((((...((((...))))..))))).)))...))).))).))))))))))).(((..((((((...))))))))).)). ( -56.60) >consensus ACUCCAUAAGACUGCUCAUCUGACAGAGGUCCGCCUUCCGCCUUCUUCGCAGAUUCUGGAGGCGGAAGGCAGCAGCCGCAAAGGCCAGCAAAAGGAGCAGCGGCAGCGCCACCUCCAGGA ...........((((((...............(((((((((((((............))))))))))))).((.(((.....)))..)).....)))))).(((...))).......... (-29.02 = -30.00 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:01 2006