Locus 6295

Sequence ID 3R_DroMel_CAF1
Location 16,434,697 – 16,434,788
Length 91
Max. P 0.946287
window10271

overview

Window 1

Location 16,434,697 – 16,434,788
Length 91
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 90.07
Mean single sequence MFE -39.08
Consensus MFE -33.87
Energy contribution -34.23
Covariance contribution 0.36
Combinations/Pair 1.13
Mean z-score -2.23
Structure conservation index 0.87
SVM decision value 1.36
SVM RNA-class probability 0.946287
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16434697 91 + 27905053
CCCAACACGCUCAAAAAUAGCACCCCGCCCAGCCUGGGGGGCGGUGGUGCGGGUCACCAGGGCCACGGAAACGGCUC---CUCCAGCGCCCAAC
...................(((((((((((........)))))).)))))((....)).((((..((....))(((.---....)))))))... ( -40.10)
>DroSec_CAF1 30585 91 + 1
CCAAACACGCUCAAAAAUAGCACCCCGCCCAGCCUGGGGGGCGGUGGUGCGGGUCACCAGGGCCACGGAAACGGCUC---CUCCAGCGCCCAAC
...................(((((((((((........)))))).)))))((....)).((((..((....))(((.---....)))))))... ( -40.10)
>DroSim_CAF1 31052 91 + 1
CCAAACACGCUUAAAAAUAGCACCCCGCCCAGCCUGGGGGGCGGUGGUGCGGGUCACCAGAGCCACGGAAACGGCUC---CUCCAGCGCCCAAC
.......((((........(((((((((((........)))))).)))))((....)).(((((..(....))))))---....))))...... ( -38.90)
>DroEre_CAF1 30437 91 + 1
CCAAACACGCUCAAAAAUAGCACCCCGCCCAGCCUGGGGGGCGGUGGUGCGAGUCAUCCGGGCCACGGAAACGGCUC---CUCCAGCGCCCAAC
.......((((........(((((((((((........)))))).)))))(((((.((((.....))))...)))))---....))))...... ( -39.10)
>DroYak_CAF1 34790 91 + 1
CCAAACACGCUCAAAAAUAGCACCCCGCCCAGCCUGGGGGGCGGUGGUGCGGGUCACCCGGGCCACGGAAACGGCUC---CUCCAGCGCCCAAC
...................(((((((((((........)))))).)))))(((...)))((((..((....))(((.---....)))))))... ( -41.00)
>DroAna_CAF1 24858 94 + 1
CCCAACACGCUCAAGAACAGCACCCCGCCCAGCCUGGGGGGCGGCGGUGCAGGUCUCCCCGGCGUCAGUAAUGGAUCGUCCGCCAGUGCACAGU
......(((((..(((...(((((((((((........)))))).)))))...)))....)))))..(((.(((........))).)))..... ( -35.30)
>consensus
CCAAACACGCUCAAAAAUAGCACCCCGCCCAGCCUGGGGGGCGGUGGUGCGGGUCACCAGGGCCACGGAAACGGCUC___CUCCAGCGCCCAAC
.......((((........(((((((((((........)))))).))))).((......(((((..(....)))))).....))))))...... (-33.87 = -34.23 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:00 2006