Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,319,492 – 2,319,588 |
Length | 96 |
Max. P | 0.627056 |
Location | 2,319,492 – 2,319,588 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 85.83 |
Mean single sequence MFE | -38.93 |
Consensus MFE | -28.01 |
Energy contribution | -28.92 |
Covariance contribution | 0.90 |
Combinations/Pair | 1.23 |
Mean z-score | -2.86 |
Structure conservation index | 0.72 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627056 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2319492 96 + 27905053 CAGUAACUCGAUGUCAGCUCCACCGGGAAUACCGGUGAGCAGUGGACACCCCGAAGUAGGGGCCACUGCAUCGGCACCGCCCAGCACCACCCAUCA .........((((...(((.((((((.....)))))).(((((((...((((......)))))))))))...)))...((...))......)))). ( -38.40) >DroSec_CAF1 25229 96 + 1 CAGUAACUCGAUGGCAGCUCCACCGGGAACACCGGUGGGCGGUGGACACCCCGAAAUAGGGGCCACAGCAUCGGCACCGCCCAGCACCACCCAUCA .........((((...((.(((((((.....)))))))))(((((...((((......)))).....((...(((...)))..)).))))))))). ( -43.40) >DroSim_CAF1 25391 96 + 1 CAGUAACUCGAUGGCAGCUCCACCGGGAACACCGGUGGGCGGUGGACACCCCGAAAUAGGGGCCACAGCAUCGGCACCGCCCAGCACCACCCAUCA .........((((...((.(((((((.....)))))))))(((((...((((......)))).....((...(((...)))..)).))))))))). ( -43.40) >DroEre_CAF1 31043 96 + 1 CAGCAACUCGAUGGCAGCUCCACCGGGAACACCGGUGGGCGGCGGACACCCCGAAGUAGGCGCUACUGCAUCGGCACCGCCCAGCACCACCCACCA ..((............((.(((((((.....)))))))))(((((.....((((.((((......)))).))))..)))))..))........... ( -40.20) >DroYak_CAF1 25193 96 + 1 CAGCAACUCGAUGACAGCUCCACCGGGAACACCGGUGGGCGGUGGACACCCCGAACUAGGGGCCACUGCAUCGGCACCGCCCAGCACCACCCACCA ..((.....((((.(.((.(((((((.....)))))))))(((((...((((......))))))))))))))(((...)))..))........... ( -40.90) >DroAna_CAF1 27566 84 + 1 CAGCAAUUCUAUGACCC--CCUCUG---CCACCG-------GUGGACAUCCCGAGGUGGGGGCCACCGCCUCGGCACCGCCCAGUACCAGCCACCA .................--...(((---..((.(-------((((.....(((((((((......)))))))))..)))))..))..)))...... ( -27.30) >consensus CAGCAACUCGAUGGCAGCUCCACCGGGAACACCGGUGGGCGGUGGACACCCCGAAGUAGGGGCCACUGCAUCGGCACCGCCCAGCACCACCCACCA ..((............((.(((((((.....)))))))))(((((....(((......)))(((........))).)))))..))........... (-28.01 = -28.92 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:52 2006