Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,408,580 – 16,408,676 |
Length | 96 |
Max. P | 0.848923 |
Location | 16,408,580 – 16,408,676 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 79.71 |
Mean single sequence MFE | -21.68 |
Consensus MFE | -15.56 |
Energy contribution | -15.82 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.18 |
Mean z-score | -1.70 |
Structure conservation index | 0.72 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16408580 96 - 27905053 UCGUUUAAAAUUAACUACUUACAAUUGAUUGUUAAUUU--UUCUAUGCAGCUCAGCGUCAAUCUCAGCUUUCGGUUGUAGUUGUGCCCGUAAGCUGCA ......(((((((((...............))))))))--)....(((((((..(((.((((..((((.....))))..))))))).....))))))) ( -23.16) >DroSec_CAF1 4209 95 - 1 UUAUUUAAAUUAAACUACUU-CGAUUGAUUGUUCAUUU--GUCUAUGCAGCUCAGCGUCAAUCUCAGCUUUCGGGUGUAGUUGUGCCCGUAAGCUGCA ....................-.(((((((.(((.(.((--((....)))).).)))))))))).((((((.((((..(....)..)))).)))))).. ( -26.10) >DroSim_CAF1 4222 95 - 1 UUAUGUAUAUUGAACUACUU-CGAUUGAUUGUUCAUUU--GACUAUGCAGCUCAGCGUCAAUCUCAGCUUUCGGUUGUAGUUGUGCCCGUAAGCUGCA ....((....(((((....(-(....))..)))))...--.))..(((((((..(((.((((..((((.....))))..))))))).....))))))) ( -23.90) >DroEre_CAF1 4280 95 - 1 UAAUUUUCAUUUAAUUCUUUACAAUUGAUUGUUU-UUU--GACUACGCAGCUCAGCGACAAUCUCAGCUUUCAGUUGUAGUUGUGCCCGUAAGCUGCA .......((.((((((......)))))).))...-...--......((((((..((((((((..((((.....))))..)))))...))).)))))). ( -21.40) >DroYak_CAF1 4271 96 - 1 UAAUUUAAAUAUAAUUCUUUACAAUUUAUUGUUUAUUU--GACUACGCAGCUCAGCAUCAAUCUCAGCUUUCAGUCGUGGUUGUGCCCGUAAGCUGCA ....(((((((.........((((....)))).)))))--))....((((((..(((.(((((.(.((.....)).).)))))))).....)))))). ( -19.40) >DroAna_CAF1 3905 95 - 1 GAAUUUAAAUAAUCUUAUUUGC---UAAUCGGACAUUUCUAACACUAUAGCUCAGCGCCAAUCGCAGCUUUCAGUUGUUGUUGUGCCAGUUACUUGCA ...................(((---((((.((.(((..(.((((((..((((..(((.....)))))))...)).)))))..))))).))))...))) ( -16.10) >consensus UAAUUUAAAUUUAACUACUUACAAUUGAUUGUUCAUUU__GACUAUGCAGCUCAGCGUCAAUCUCAGCUUUCAGUUGUAGUUGUGCCCGUAAGCUGCA ..............................................((((((..(((.((((..((((.....))))..))))))).....)))))). (-15.56 = -15.82 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:46 2006