| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,406,954 – 16,407,053 |
| Length | 99 |
| Max. P | 0.886540 |
| Location | 16,406,954 – 16,407,053 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 70.52 |
| Mean single sequence MFE | -29.52 |
| Consensus MFE | -12.84 |
| Energy contribution | -13.65 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16406954 99 - 27905053 UAAUAGCACCACAAAAUUGGUGCCAGUUAGCUGUGGGUUCGCAGCUGGACAUCUCACGGCUGCAAUCACAUGC---------AGAUGUUUCAGAAAGCUGCACUUUUG .....((((((......))))))(((((.(((((((....(((((((((....)).)))))))..))))).))---------.((....))....)))))........ ( -32.50) >DroSec_CAF1 2567 96 - 1 UAAUAGCACCACAAAAUUGGUGCCAGUUAGCUGUGGGUUCACAGCUGGACAUCUCACGGCUGCAAUCAUAU------------GCUGUUUCAGAAAGCUGGACUUUUG .....((((((......))))))((((((((((((....))))))).....(((.(((((...........------------)))))...))).)))))........ ( -29.20) >DroSim_CAF1 2575 99 - 1 UAAUAGCACCACAAAAUUGGUGCCAGUUAGCUGUGGGUUCCCAGCUGGACAUCUCACGGCUGCAAUCAUAUAC---------AGCUGUUUCAGAAAGCUGGUCUUUUG .....((((((......))))))..((.(((((((((.(((.....)))...))))))))))).........(---------((((.........)))))........ ( -32.10) >DroEre_CAF1 2560 99 - 1 UAAUUACUCCACAAAAUUGGUGCAAACUAGCCGUAGGGUCGCAGCUGGACAUCUUACGGCUGCAAUCCCAAAA---------AUCUUUUUCAGAAAGCUGCACAUUUA ...................(((((...........(((..(((((((.........)))))))...)))....---------.(((.....)))....)))))..... ( -24.30) >DroYak_CAF1 2543 99 - 1 UAAUUAUUCCACAAAAUUGGUGCAAUCUGGCUGUAGGGUCUCAGCUGGACAUCUCACGGCUGAAAUCCCAAAA---------AUCUGUUUCAGAGAGCUGCACAUUUA ...................(((((.((........(((..(((((((((....)).)))))))...)))....---------.((((...))))))..)))))..... ( -26.30) >DroPer_CAF1 3350 108 - 1 AUGUUGUGCCCACCGAAUGGUGCGCAUGCAUCAUUGGCUCCGAGGAGCAUAUGCUUCGGCUGCGAUCGCAGGACAAUUGUAAAGAAGUCUACAAAUACUGCACUCGUC ((((((((((((.....))).))))).)))).....((((....))))....((....)).((((..((((.....(((((........)))))...))))..)))). ( -32.70) >consensus UAAUAGCACCACAAAAUUGGUGCCAGUUAGCUGUGGGUUCCCAGCUGGACAUCUCACGGCUGCAAUCACAUAA_________AGCUGUUUCAGAAAGCUGCACUUUUG .....((((((......))))))....((((((((((....(.....)....)))))))))).............................................. (-12.84 = -13.65 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:45 2006