Locus 6285

Sequence ID 3R_DroMel_CAF1
Location 16,399,404 – 16,399,507
Length 103
Max. P 0.915791
window10251

overview

Window 1

Location 16,399,404 – 16,399,507
Length 103
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 91.33
Mean single sequence MFE -32.42
Consensus MFE -27.98
Energy contribution -28.42
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.60
Structure conservation index 0.86
SVM decision value 1.10
SVM RNA-class probability 0.915791
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16399404 103 - 27905053
AGUGCAUUAGACACUUCACUAAGC--------AGCCAGCUGGCUGGGAAAACCGCUGCGCAUGCGCACGAUUAAGGCUAUUAGAUUAGUGAUUUCCCAGUCUCUGGGUAAG
..(((.((((........))))))--------).((((..((((((((((..((.((((....))))))......((((......))))..)))))))))).))))..... ( -35.70)
>DroSec_CAF1 3141 103 - 1
AGUGCAUUAGACACUUCACUAAAC--------AGCCAGCUGGCUGGGAAAACCACUGCGCAUGCGCACGAUUAAGGCUAUUAGAUUAGCGAUUUCCCAGUCUCUGGGUAAG
(((((....).)))).........--------..((((..((((((((((.....((((....))))........((((......))))..)))))))))).))))..... ( -33.00)
>DroSim_CAF1 8282 103 - 1
AGUGCAUUAGACACUUCACCAAAC--------AGCCAGCUGGCUGGGAAAACCGCUGCGCAUGCGCACGAUUAAGGCUAUUAGAUUAGCGAUUUCCCAGUCUCUGGGUAAG
(((((....).)))).........--------..((((..((((((((((..((.((((....))))))......((((......))))..)))))))))).))))..... ( -35.10)
>DroEre_CAF1 4507 102 - 1
AGUGCAUUGGACACUU-ACUGAAC--------AGGCAGCUGGCUGGGAAAACUGCUGCGCAUGCGCACGAUUAAGGCUAUUAGAUUAGUGAUUUCCCAGUCUCUGGGUAAG
.............(((-(((....--------...(((..((((((((((.((.(((((....)))).)....))((((......))))..)))))))))).))))))))) ( -29.01)
>DroYak_CAF1 6828 107 - 1
AGUGCAUUGGACACUC-ACUAAACUCACUAAAAGGCAGCUGGCUGGGAAAACUGC-GCGCAUGCGCACGAUUAAGGCUAUUAGAUUAG--AUUUCCCAGUCUCUGGGUAAG
((((..((((......-.))))...))))......(((..((((((((((..(((-((....))))).........(((......)))--.)))))))))).)))...... ( -29.30)
>consensus
AGUGCAUUAGACACUUCACUAAAC________AGCCAGCUGGCUGGGAAAACCGCUGCGCAUGCGCACGAUUAAGGCUAUUAGAUUAGCGAUUUCCCAGUCUCUGGGUAAG
(((((....).))))...................((((..((((((((((......(((....))).........((((......))))..)))))))))).))))..... (-27.98 = -28.42 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:40 2006