| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,395,215 – 16,395,317 |
| Length | 102 |
| Max. P | 0.923881 |
| Location | 16,395,215 – 16,395,317 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 82.32 |
| Mean single sequence MFE | -26.53 |
| Consensus MFE | -16.88 |
| Energy contribution | -19.00 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.923881 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16395215 102 + 27905053 GCUGCAUCA--CAGUCAGUGCUUACGACUCUAAGUGUUGUUGAUCAUGGGUGAUUAUAAUUGUAUCGAUUC--UCGGUAUAAUUAUAAGUUUAUUCACUGCUAAUU ...(((...--(((.(((..((((......))))..))))))....(((((((((((((((((((((....--.))))))))))))))..))))))).)))..... ( -27.90) >DroSim_CAF1 2930 91 + 1 GCUCCAUCACACAGCCAGUGCUUACGACUCUAAGUGCUGUUGA---UGGGUGAUUAUAAUUGUAUCGGUUC--UCGGUA----------UUUAUUCACUGCUAAUU ((.((((((.(((((....(((((......)))))))))))))---)))((((.((.....((((((....--.)))))----------).)).)))).))..... ( -25.60) >DroYak_CAF1 2874 99 + 1 GCUACAUC----AGCCACUGCUUACGACUCUAAGUACUGUUGA---UGGGUGAUUUUAAUUGUAUCGGUUCUCUCGGUAUAAUUAUAAGUUUAUUCACUGCCAAUU ((..((((----(((...((((((......))))))..)))))---))(((((...((((((((((((.....)))))))))))).........)))))))..... ( -26.10) >consensus GCUACAUCA__CAGCCAGUGCUUACGACUCUAAGUGCUGUUGA___UGGGUGAUUAUAAUUGUAUCGGUUC__UCGGUAUAAUUAUAAGUUUAUUCACUGCUAAUU ((.........(((.(((((((((......))))))))))))....(((((((...((((((((((((.....)))))))))))).....)))))))..))..... (-16.88 = -19.00 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:37 2006