| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,393,147 – 16,393,251 |
| Length | 104 |
| Max. P | 0.650698 |
| Location | 16,393,147 – 16,393,251 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 82.70 |
| Mean single sequence MFE | -22.78 |
| Consensus MFE | -17.09 |
| Energy contribution | -17.53 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16393147 104 - 27905053 GCGUCGAAAAGACGUAUUAAAAACAGGAUUUUGAAUAAAAACGUUUUUUUUUUUUAUUAAAUGUUGGCAAAUUUCGCCAUUGGAAUUUUUUACGAAAUCUUCCA------------ (((((.....))))).........(((((((((......(((((((..(......)..)))))))(((.......)))..............)))))))))...------------ ( -20.70) >DroSim_CAF1 872 109 - 1 GCGUCGCAAAGACGCAUUAAAAACAGGAUUUUGAAUAAAAACGUUU------UUCAUUAAAUGUUGGCAAAUUUCGCCAUAGGAAUUUUUUCCGAAAUCUUCCAAUAGCAA-GGCA (((((.....))))).........((((((((.......(((((((------......)))))))(((.......)))...((((....))))))))))))..........-.... ( -25.00) >DroYak_CAF1 860 109 - 1 GAGUCG-AACGACGUAUUAAAAACAGGAUUUUUGAUAAAAACGUUU------UUCAUUAAAUGUUGGCAAAUUUCGCCAUCGGAAUUUUUUCUGAAAUCUUCCAAUACCAACGGCA ..((((-((.(((((((((((((.....))))))))....))))).------))).......(((((............((((((....))))))............)))))))). ( -22.65) >consensus GCGUCG_AAAGACGUAUUAAAAACAGGAUUUUGAAUAAAAACGUUU______UUCAUUAAAUGUUGGCAAAUUUCGCCAUAGGAAUUUUUUCCGAAAUCUUCCAAUA_CAA_GGCA (((((.....))))).........(((((((((......(((((((............)))))))(((.......)))..............)))))))))............... (-17.09 = -17.53 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:36 2006