Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,318,888 – 2,318,999 |
Length | 111 |
Max. P | 0.916506 |
Location | 2,318,888 – 2,318,999 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 72.13 |
Mean single sequence MFE | -45.10 |
Consensus MFE | -13.38 |
Energy contribution | -14.55 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.17 |
Mean z-score | -2.47 |
Structure conservation index | 0.30 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2318888 111 - 27905053 GAGCGAAAGAUGGCUCUUUUGGCAGCCGCCGAGGCGAGAGUCUUGUACAGGUGGCUCUUGUUGGGCGGCAGACCGAUUACGCCGGAAGCGGAAGUGGUAGGAGGUGGCGAG ((((........))))..(((.((((((((..((((((((((..........)))))))))).))))))...((.(((((.(((....)))..))))).))...)).))). ( -46.50) >DroVir_CAF1 86582 87 - 1 GACCGAAAGACUGCUCUUUUGGCUGCCGCCGUGGCCAGCGAUUUGUACAGAUGGCUUUUGUUGGGCGACAGUCCA---------------------GCCGGCGG---CUCU ..((((((((....))))))))..(((((((.(((((.(..........).)))))...(((((((....)))))---------------------))))))))---)... ( -38.70) >DroPse_CAF1 29175 96 - 1 GAUCGAAAAAUGGCCCGCUUGGCCGCUGCCGUGGCCAGGGUCUUGUACAGAUGACUCUUGUUCGGCGACAUGCCACUGAC------------AGAUGUCGGUGG---CGGA ...........((((.....))))(.(((((.(((.((((((..........)))))).)))))))).).((((((((((------------....))))))))---)).. ( -41.00) >DroEre_CAF1 30276 108 - 1 GAGCGGAAGAUGGCUCUCUUGGCAGCCGCCGAGGCGAGGGUCUUGUACAGGUGACUCUUGUUGGGCGGCAGACCGAUUACGCCAGAGGCGGAAGUGGUUGGAGG---CGGG ((((........)))).((((.(.((((((..((((((((((..........)))))))))).)))))).(((((....((((...))))....)))))...).---)))) ( -47.50) >DroYak_CAF1 24521 108 - 1 GAGCGGAAGAUGGCUCUUUUGGCAGCCGCCGAGGCGAGUGUCUUGUACAGGUGACUCUUGUUGGGCGGCAGACCGAUUACGCCGGAAGCGGAAGUGGUUGGCGG---CGGG ((((........))))........((((((..((((((.(((..........))).)))))).))))))...(((....((((((..((....))..)))))).---))). ( -48.40) >DroAna_CAF1 27093 96 - 1 GAGCGGAAGAUGGCGCGCUUGGCCGCCGCCGAGGCCAGCGUCUUGUACAGCUGGCUCUUGUUGGGCGUAAGUCCG------------GCGAGGGAUGUUGGAGG---CGGA (((((..........)))))..(((((.(((((((((((..........)))))))((((((((((....)))))------------))))).....)))).))---))). ( -48.50) >consensus GAGCGAAAGAUGGCUCUCUUGGCAGCCGCCGAGGCCAGCGUCUUGUACAGGUGACUCUUGUUGGGCGGCAGACCGAUUAC_______GCGGAAGUGGUUGGAGG___CGGG ((((........))))...((((.(.(((((((((....)))))..(((((.....)))))..)))).).).))).................................... (-13.38 = -14.55 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:51 2006