Locus 6277

Sequence ID 3R_DroMel_CAF1
Location 16,386,013 – 16,386,110
Length 97
Max. P 0.995829
window10236

overview

Window 6

Location 16,386,013 – 16,386,110
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 90.52
Mean single sequence MFE -17.02
Consensus MFE -13.64
Energy contribution -13.80
Covariance contribution 0.16
Combinations/Pair 1.22
Mean z-score -2.89
Structure conservation index 0.80
SVM decision value 2.62
SVM RNA-class probability 0.995829
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16386013 97 - 27905053
GCCAUUGAUCUACUCUAACCACCUCCACCGCAUUUGUUAUUAAAACCAGCCACCGCAACAAACUAAUGACAGAUGCUUAUCUGCCCAAGCAAUCGAA
....(((((....................(((((((((((((......((....)).......))))))))))))).....(((....)))))))). ( -18.02)
>DroSec_CAF1 7337 97 - 1
GCCAUUGAUAUAUUCUAACCACCUCCACCGCAUUUGUUAUUAAAACCAGCCACCGCAACAAACUAAUGACAGAUGCCAAUCUGCCCAAGCAAUCGAG
....(((((....................(((((((((((((......((....)).......))))))))))))).....(((....)))))))). ( -18.22)
>DroSim_CAF1 7344 97 - 1
GCCAUUGAUCUAUUCUAACCACCUCCACCGCAUUUGUCAUUAAAACCAGCCACCGCAACAAACUAAUGACAGAUGCCUAUCUGUCCAAGCAAUCGAG
....(((((....................(((((((((((((......((....)).......))))))))))))).....(((....)))))))). ( -18.12)
>DroEre_CAF1 7756 97 - 1
GCCAUUGAUCUACUCUAACCACCUCCACCGCAUUUGUUAUUAAAACCAUUAACCGCAACCAACUAAUGACAGAUGCCUAUCUGUCCAAACAAUCGAA
....(((((....................(((((((((((((.....................))))))))))))).....(((....)))))))). ( -14.10)
>DroYak_CAF1 7304 95 - 1
GCU-UUGAUCUACUCCAACCACCUCCACCGCAUUUGUCAUUAAAACCAGCAACCGCAACAAACUAAUGACAGAUGGCUAUCUGCACAAAU-ACCGAA
..(-(((.......................((((((((((((......((....)).......))))))))))))((.....)).)))).-...... ( -16.62)
>consensus
GCCAUUGAUCUACUCUAACCACCUCCACCGCAUUUGUUAUUAAAACCAGCCACCGCAACAAACUAAUGACAGAUGCCUAUCUGCCCAAGCAAUCGAA
....(((((....................(((((((((((((......((....)).......))))))))))))).....(((....)))))))). (-13.64 = -13.80 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:25 2006