Locus 6276

Sequence ID 3R_DroMel_CAF1
Location 16,385,863 – 16,385,973
Length 110
Max. P 0.908259
window10235

overview

Window 5

Location 16,385,863 – 16,385,973
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 88.08
Mean single sequence MFE -27.09
Consensus MFE -20.30
Energy contribution -20.06
Covariance contribution -0.24
Combinations/Pair 1.17
Mean z-score -2.25
Structure conservation index 0.75
SVM decision value 1.06
SVM RNA-class probability 0.908259
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16385863 110 + 27905053
UAUCAACGAAAAAUACCAACCUAUAACGCUGCCCCAAAACGGGCGGCUAGUUUUGAAUAAAGUUUCUAUCUCCCCCAACUUGGUCCAAAGUCCAACGUUUUCGGGGAUAA
...........................(((((((......))))))).......(((......)))(((((((...(((((((.(....).)))).)))...))))))). ( -27.30)
>DroSec_CAF1 7187 110 + 1
UAUCAACGAAAAAUACCAACUUACAACGCUGCUCCAAAACGGGCGGCUGGUUUUGAAUAAAGUUUCUAUCUCCCCCAACUUGGUCCAAAGUCCAACGUUUUCGGGGAUAA
((((..((((((...............(((((((......)))))))((((((((.((.(((((............))))).)).))))).)))...))))))..)))). ( -28.10)
>DroSim_CAF1 7194 110 + 1
UAUCAAUGAAAAAUACCAACUUACAACGCUGCUCCAAAACGGGCGGCUGGUUUUGAAUAAAGUUUCUAUCUCCCCCAACUUGGUCCAAAGUCCAACGUUUUCGGGGAUAA
.......((((...........((...(((((((......)))))))..))...........))))(((((((...(((((((.(....).)))).)))...))))))). ( -26.05)
>DroEre_CAF1 7610 106 + 1
UAUCAACGAAAAAUACCAAACUAAAACG-UAAUCACAAACGGACGGUAGGC-UUGAAUCAAGUUUCUAUUUGCGCCAACUUGGUUCAAAGUCCA--GUUUUCGUGAAUAA
(((..(((((((.((((.........((-(........)))...))))(((-((((((((((((............)))))))))).)))))..--.)))))))..))). ( -23.40)
>DroYak_CAF1 7155 109 + 1
UCUCAACGAAAAAUACCAAACUCAAACGCUGCUCCAAAACGGGCGGUUGGC-UUGAAUCAAGUUUCUAUCUCCGCCAACUUGGUUCAAAGUCCAAAGUUUUCGGGGAUAA
..((..((((((...............(((((((......)))))))((((-((((((((((((............)))))))))).))).)))...))))))..))... ( -30.60)
>consensus
UAUCAACGAAAAAUACCAACCUAAAACGCUGCUCCAAAACGGGCGGCUGGUUUUGAAUAAAGUUUCUAUCUCCCCCAACUUGGUCCAAAGUCCAACGUUUUCGGGGAUAA
...........................(((((((......))))))).......(((......)))(((((((...(((((((........)))).)))...))))))). (-20.30 = -20.06 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:24 2006