| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,385,678 – 16,385,781 |
| Length | 103 |
| Max. P | 0.538643 |
| Location | 16,385,678 – 16,385,781 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 76.96 |
| Mean single sequence MFE | -32.85 |
| Consensus MFE | -19.48 |
| Energy contribution | -19.20 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.538643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16385678 103 + 27905053 UGUAGCUCCAGCCCAGAUGGAUCCCCACCAGACUGGGGAUCAUCACGACGGCCACCAGGUUGCGCGACACGAACGA---GGGCUGCUUGCUCAUCUUUAC---AAAAUU--- ((.(((..((((((.....((((((((......)))))))).((.((.(((((....))))))).)).........---))))))...))))).......---......--- ( -39.30) >DroPse_CAF1 11441 97 + 1 UAUAGCCCCAGCCGAGAUGAAUGCCAAUCAGGCUAGGCACCAUCACAAUGGUAACCAGGUUGCGCGACACAAACGA---CGGUUGCUUGGGCAUAAUUUC------------ ....(((((((((.........(((.....)))..((.(((((....)))))..)).))))).(((((.(......---.))))))..))))........------------ ( -28.70) >DroSec_CAF1 7002 103 + 1 UGUAGCUCCAGCCCAGAUGGAUCCCCACCAGACUGGGGAUCAUCACGAUGGCCACCAGAUUGCGCGACACAAACGA---GGGCUGCUUGCUCAUCUUUAC---AAAGUG--- ((.(((..((((((.((((.(((((((......)))))))))))......((((......)).))...........---))))))...))))).......---......--- ( -34.10) >DroSim_CAF1 7009 103 + 1 UGUAGCUCCAGCCCAGAUGGAUCCCCACCAGACUGGGGAUCAUCACGAUGGCGACCAGGUUGCGCGACACGAAAGA---GGGCUGCUUGCUCAUCUUUAC---AAAGUG--- ((.(((..((((((.((((.(((((((......))))))))))).((...(((((...))))).))...(....).---))))))...))))).......---......--- ( -38.40) >DroAna_CAF1 6295 100 + 1 UGUAGCUCCAGCCGAGGUGGAUCCCAAUCAAGGACGGCACCAUCACAAUGGCCACCAAGUUACGGGAGAAAAACGAUGGGGGCUGCUUGGACAUUGUUAA------------ .((((((((...((.(((((.(((.......))).....((((....)))))))))......(....).....))...))))))))..............------------ ( -27.90) >DroPer_CAF1 11362 109 + 1 UAUAGCCCCAGCCGAGAUGAAUGCCAAUCAGGCUAGGCACCAUCACAAUGGUAACCAGGUUGCGCGACACAAACGA---CGGUUGCUUGGGCAUAAUUUCUGUAAAAUUUGA ....(((((((((.........(((.....)))..((.(((((....)))))..)).))))).(((((.(......---.))))))..)))).................... ( -28.70) >consensus UGUAGCUCCAGCCCAGAUGGAUCCCAACCAGACUGGGCACCAUCACAAUGGCCACCAGGUUGCGCGACACAAACGA___GGGCUGCUUGCUCAUCUUUAC___AAA_U____ ........((((((.(((((.((((..........)))))))))....(((...)))......................))))))........................... (-19.48 = -19.20 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:23 2006