| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,383,451 – 16,383,551 |
| Length | 100 |
| Max. P | 0.579540 |
| Location | 16,383,451 – 16,383,551 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 68.03 |
| Mean single sequence MFE | -23.71 |
| Consensus MFE | -12.64 |
| Energy contribution | -14.07 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16383451 100 - 27905053 GGC-UCUGGAACAAAUUUUA-----UAAAC----------AAUUUUU-GACAGCAGUCCUC--UCUUAAUUUGCACCACUGUGCCACAGUU-AGAGGGUUGCGGUCUGGGCUUACCUCCA ...-...(((..........-----.....----------.......-(((.(((..((((--(........((((....)))).......-)))))..))).))).((.....))))). ( -26.16) >DroSec_CAF1 4796 85 - 1 ----------------UUGA-----UACAA----------AUUUUUA-GACAGCAGUCCGC--UCUUAAUUUGCACCACUGUGCCACUGUU-AAAUGGUUGCUGUCUUGGCUUACAUCCA ----------------....-----.....----------......(-((((((((.(((.--..(((((..((((....))))....)))-)).))))))))))))............. ( -20.50) >DroSim_CAF1 4785 100 - 1 GGC-UCUGGAAAAAAGUUAA-----UACAA----------AUUUUUA-GACAGCAGUCGUC--UCUUAAUUUGCACCACUGUGCCACUGUU-GAAUGGUUGCUGUCUUGGCUUACCUCCA ...-...(((...((((((.-----.....----------......(-(((((((..(((.--..(((((..((((....))))....)))-)))))..))))))))))))))...))). ( -26.50) >DroEre_CAF1 4857 119 - 1 AGUGUAUAGAUUUAAUUCCUUAAUUUAAGGUAUAUUUAGUAUUUAAAU-AUAGCAGUCCUCUCUCUAAAUUUGCACUACUGUGCGACAGUUAAAAUGGUUGCGGACUUGGCUUUACUCCA .(.(((.((...(((.(((...........(((((((((...))))))-)))((((.((...........((((((....))))))..........))))))))).))).)).))).).. ( -21.70) >consensus GGC_UCUGGAA_AAAUUUAA_____UAAAA__________AUUUUUA_GACAGCAGUCCUC__UCUUAAUUUGCACCACUGUGCCACAGUU_AAAUGGUUGCGGUCUUGGCUUACCUCCA ................................................(((((((..(((............((((....))))..........)))..))))))).............. (-12.64 = -14.07 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:22 2006