Locus 6272

Sequence ID 3R_DroMel_CAF1
Location 16,377,580 – 16,377,682
Length 102
Max. P 0.538090
window10228

overview

Window 8

Location 16,377,580 – 16,377,682
Length 102
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 89.16
Mean single sequence MFE -30.32
Consensus MFE -24.58
Energy contribution -24.50
Covariance contribution -0.08
Combinations/Pair 1.12
Mean z-score -1.38
Structure conservation index 0.81
SVM decision value 0.01
SVM RNA-class probability 0.538090
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16377580 102 - 27905053
AGGGUCG-GGGGUGGCAUUCUCAUGCUCGCUUGUUGCUGCGCACAACAGGUGAAAAUUCAGAAGUCGCGUAUGUUUAUAUGCAGAAUACACAAGAGUUGGCAA
...((((-(..(((((.((((.((..((((((((((.......))))))))))..))..)))))))))(((((....)))))..............))))).. ( -26.70)
>DroSec_CAF1 76921 103 - 1
GGGGGCGUGGGGUGGCAUUCCCAUGCUCGCUUGUUGCUGCGCACAACAGGUGAAAAUUCAGGAGUCGCGUAUGUUUAUGUGCAGAAUACACAAGAGUAGACAA
..((((((((((......)))))))))).(((((..(((((((.((((.((((...........))))...))))..))))))).....)))))......... ( -35.20)
>DroSim_CAF1 85289 102 - 1
AGGGGCG-GGGGUGGCAUUCCCAUGCUCGCUUGUUGCUGCGCACAACAGGUGAAAAUUCAGGAGUCGCGUAUGUUUAUGUGCAGAAUACACAAGAGUAGACAA
..(((((-((.((((.....)))).)))))))((..(((((((.((((.((((...........))))...))))..)))))))...)).............. ( -30.70)
>DroEre_CAF1 76355 93 - 1
--------GGGGUGGCAUACCCAUGCUCGCUUGUUGCUGCGCACAACAGGUGAAAAU-CGGAAGUCGC-UAUGUUUAUGUGCGGAAUACACAAGAGUAGACAA
--------.(((((...))))).(((((...(((..(((((((.(((((((((....-(....)))))-).))))..)))))))...)))...)))))..... ( -30.20)
>DroYak_CAF1 95357 93 - 1
--------GGGGUGGCUUACCCAUGCUCGCUUGUUGCUGCGCACAACAGGUGAAAAU-AAGAAGUCGC-UAUGUUUAUGUGUAGAAUACACAAGAGUAGACAA
--------..((((((((....((..((((((((((.......))))))))))..))-...)))))))-).((((((((((((...))))))....)))))). ( -28.80)
>consensus
_GGG_CG_GGGGUGGCAUUCCCAUGCUCGCUUGUUGCUGCGCACAACAGGUGAAAAUUCAGAAGUCGCGUAUGUUUAUGUGCAGAAUACACAAGAGUAGACAA
........(((........))).(((((...(((..(((((((.((((.((((...........))))...))))..)))))))...)))...)))))..... (-24.58 = -24.50 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:18 2006