Locus 6271

Sequence ID 3R_DroMel_CAF1
Location 16,376,429 – 16,376,520
Length 91
Max. P 0.524498
window10227

overview

Window 7

Location 16,376,429 – 16,376,520
Length 91
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 83.46
Mean single sequence MFE -22.87
Consensus MFE -15.80
Energy contribution -17.20
Covariance contribution 1.40
Combinations/Pair 1.19
Mean z-score -1.75
Structure conservation index 0.69
SVM decision value -0.02
SVM RNA-class probability 0.524498
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16376429 91 - 27905053
-------GUACCAAUACAAACUAACCGAUACCAGCCAGCCGUGUGUGUUUACACAGUGUUGUGCGUUGGUGUUUGUGUACCAAAGGUAAAUAGA-AAUA
-------.((((.((((((((..(((((..(((((..((.(((((....))))).)))))).)..)))))))))))))......))))......-.... ( -24.50)
>DroSec_CAF1 75752 92 - 1
-------GUACCAAUACAAACAAACCGAUACCAGCCAGCCGUGUGUGUUUACACAGUGUUGUGCGUUGGUGUUUGUGUACCAAAGGUAAAUAGAAAAUA
-------.((((.((((((((..(((((..(((((..((.(((((....))))).)))))).)..)))))))))))))......))))........... ( -24.50)
>DroSim_CAF1 84287 92 - 1
-------GUACCAAUACAAACAAACCGAUACCAGCCAGCCGUGUGUGUUUACACAGUGUUGUGCGUUGGUGUUUGUGUACCAAAGGUAAAUAGAAAAUA
-------.((((.((((((((..(((((..(((((..((.(((((....))))).)))))).)..)))))))))))))......))))........... ( -24.50)
>DroEre_CAF1 75218 92 - 1
-------GUACCAACACAAACAAACCGAUACCAGCCAGCCGUGUGUGUUUACACAGUGUUGUGCGCUGGUGUUUGUGUACCAAAGGUAAAUAGAAAAUA
-------.((((.((((((((........((((((((((..(((((....)))))..))))...))))))))))))))......))))........... ( -25.60)
>DroYak_CAF1 94206 90 - 1
-------GUACCAACACAAACAAACCGAUACCAGCCAGCCGUG--UGUUUACAUAGUGUUGUGCGCUGGUGUUUGUGUACCAAAGGUAAAUAGAAAAUA
-------.((((.((((((((........((((((((((..((--((....))))..))))...))))))))))))))......))))........... ( -23.20)
>DroMoj_CAF1 95233 89 - 1
GCUACCAAUACCAACAUAUGCACACACAUACAUUC--UUCGUACGUGUUUACACCUU---CUGAG---CUGUUUGUGUAUUAAAGGUAAAUAGAAUA--
........((((.....((((((((((.(((....--...))).))))..(((.((.---...))---.)))..))))))....)))).........-- ( -14.90)
>consensus
_______GUACCAACACAAACAAACCGAUACCAGCCAGCCGUGUGUGUUUACACAGUGUUGUGCGUUGGUGUUUGUGUACCAAAGGUAAAUAGAAAAUA
........((((.((((((((........((((((((((..(((((....)))))..))))...))))))))))))))......))))........... (-15.80 = -17.20 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:17 2006