Locus 6270

Sequence ID 3R_DroMel_CAF1
Location 16,368,387 – 16,368,484
Length 97
Max. P 0.994811
window10226

overview

Window 6

Location 16,368,387 – 16,368,484
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 91.65
Mean single sequence MFE -23.74
Consensus MFE -21.20
Energy contribution -21.20
Covariance contribution -0.00
Combinations/Pair 1.06
Mean z-score -1.98
Structure conservation index 0.89
SVM decision value 2.51
SVM RNA-class probability 0.994811
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16368387 97 + 27905053
AGCUCAUAGAACAUGGCUUUAUGAGCGCGGUAAAGAGCCCAAUGAAUGCGACCAUGCUGGCUUUAACCUUUUAUUACCAUAACAAAAAAUUAUUGCA
.(((((((((.......)))))))))(((((((((((((..(((........)))...))))))......((((....)))).......))))))). ( -24.10)
>DroSec_CAF1 68121 97 + 1
AGCUCAUAGAAUGUGGCUUUAUGAGCGCGGUAAAGAGCCCAAUGAAUGCGACCAUGCUGGCUUUAGCCUUUUAUUACCAUAACGAAAAAUUAUUGCA
.(((((((((.......)))))))))(((((((((((((..(((........)))...))))))....(((..(((...)))..)))..))))))). ( -24.60)
>DroSim_CAF1 76295 97 + 1
AGCUCAUAGAACGUGGCUUUAUGAGCGCGGUAAAGAGCCCAAUGAAUGCGACCAUUCUGGCUUUAGCCUUUUAUUACCAUAACGAAAAAUUAUUGCA
.(((((((((.......)))))))))(((((((((((((....(((((....))))).))))))....(((..(((...)))..)))..))))))). ( -26.40)
>DroEre_CAF1 66950 97 + 1
AGCUCAUAGAACAUCACUUUAUGAGCGCGGUAAAGAGCUGAAUGAAUGCGACCAUUCUGGCUUUAGCCUUUUAUUAUCAUAACGAAAAAUUAUUGCA
.(((((((((.......)))))))))((((((((((((((((((........))))).))))))............((.....))....))))))). ( -26.60)
>DroYak_CAF1 85846 95 + 1
--CUCAUAGAACAAUACUUUAUGAGAGCAGUAAAGAGCUGAAUUAAUGCGACCAUGCUGGCUUUAGUCUUUUAUUACCAUAACGAAAAAUUAUUGCA
--((((((((.......))))))))..(((((....((.........)).....)))))((..((((.(((..(((...)))..))).))))..)). ( -17.00)
>consensus
AGCUCAUAGAACAUGGCUUUAUGAGCGCGGUAAAGAGCCCAAUGAAUGCGACCAUGCUGGCUUUAGCCUUUUAUUACCAUAACGAAAAAUUAUUGCA
.(((((((((.......)))))))))(((((((((((((..(((........)))...))))))....(((..(((...)))..)))..))))))). (-21.20 = -21.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:16 2006