Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,353,165 – 16,353,267 |
Length | 102 |
Max. P | 0.958070 |
Location | 16,353,165 – 16,353,267 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 81.44 |
Mean single sequence MFE | -31.58 |
Consensus MFE | -19.55 |
Energy contribution | -20.68 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.17 |
Mean z-score | -2.58 |
Structure conservation index | 0.62 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.958070 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16353165 102 - 27905053 GGUGUCAAAAUGGGGCAGUCACCGCCCAGCGAAACCCAGUAAAACUGGUAGUGUAACGCGGUGAAACUGGGAGUAUAGCCCAGUGUAGCCCAGUGAAACAUA .((.(((.....((((..(((((((...(((....((((.....))))...)))...))))))).((((((.......))))))...))))..))).))... ( -39.70) >DroSec_CAF1 52910 92 - 1 GGUGCCAAAAUGGGGCAGUCACCGCCCAGCGAAACCCAGUGAAACUGGGAGUGUAACCCGGUGGAACUGGGAGUAUAGCC----------CAGUGAAACAUA .((..((.....((((......(((...)))...((((((...((((((.......))))))...))))))......)))----------)..))..))... ( -32.70) >DroSim_CAF1 61618 92 - 1 GGUGCCAAAAUGGGGCAGUCACCGCCCAGCGAAACCCAGUGAAACUGGGAGUGUAACCCGGUGGAACUGGGAGUAUAGCC----------CAGUGAAACAUA .((..((.....((((......(((...)))...((((((...((((((.......))))))...))))))......)))----------)..))..))... ( -32.70) >DroYak_CAF1 69990 80 - 1 GGUGCCAAAAAGGGGCAGUCGCCAUCCAGCGAAACCCAGAGAAACU------------CAGUGUAGCAGUGAGUAUAGCC----------CAGUGAAACAUA ((.((......(((....((((......))))..)))......(((------------((.((...)).)))))...)))----------)........... ( -21.20) >consensus GGUGCCAAAAUGGGGCAGUCACCGCCCAGCGAAACCCAGUGAAACUGGGAGUGUAACCCGGUGGAACUGGGAGUAUAGCC__________CAGUGAAACAUA ..((((.......)))).(((((((...)))...((((((...((((((.......))))))...)))))).....................))))...... (-19.55 = -20.68 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:15 2006