| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,351,267 – 16,351,364 |
| Length | 97 |
| Max. P | 0.997082 |
| Location | 16,351,267 – 16,351,364 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 83.90 |
| Mean single sequence MFE | -28.34 |
| Consensus MFE | -24.20 |
| Energy contribution | -23.56 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.85 |
| SVM decision value | 2.80 |
| SVM RNA-class probability | 0.997082 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16351267 97 - 27905053 AAGCAGCCUGCCGCUCUUGCACCGCCCACCCGGCGCCACU-CCCGCCAUGUGGCACCACCACCACCUCAUC-AUGCCCCCUGCCGAGCGGCUAUA---GCUA .(((.....(((((((..(((..(((.....)))(((((.-........))))).................-........))).)))))))....---))). ( -32.20) >DroSec_CAF1 50987 94 - 1 AAGCAGCCUGCCGCUC-UGCACCACCCAACCGUAGCCACCCCCCGCCAUGUGGCACCA---CCCCCUCAUC-AUGCCCCCUGUCGAGCGGCUGUA---GCUA .(((.((..(((((((-.(((..((......)).(((((..........)))))....---..........-........))).))))))).)).---))). ( -27.50) >DroSim_CAF1 59682 95 - 1 AAGCAGCCUGCCGCUCUUGCACCACCCACCCGGAGCCACCCCCCGCCAUGUGGCACCA---CCCCCUCAUC-AUGCCCCCUGUCGAGCGGCUAUA---GCUA .(((.....(((((((..(((((........)).(((((..........)))))....---..........-........))).)))))))....---))). ( -25.90) >DroEre_CAF1 49996 95 - 1 AAGCAACAUGCCGCUCUUGCACCACCCACCCGGAUCCACC-CCCUCCAUGUGGAGCCA---CCCCCUCACCCACUGCCCCUGCUGAGCGGGUAUA---GCUU ((((...(((((((((..(((((........)).(((((.-........)))))....---...................))).)))).))))).---)))) ( -22.50) >DroYak_CAF1 67227 95 - 1 AAGCAACCUGCCGCCCUUGCACCACCCACCCGGUUCCACC---CUCCAUGUGGAACCA---CCCCCUCAUC-AUGCCCUCUGCUGGGCGGCUAUACAUGCUA .((((....(((((((..(((..........((((((((.---......)))))))).---....(.....-..).....))).)))))))......)))). ( -33.60) >consensus AAGCAGCCUGCCGCUCUUGCACCACCCACCCGGAGCCACC_CCCGCCAUGUGGCACCA___CCCCCUCAUC_AUGCCCCCUGCCGAGCGGCUAUA___GCUA .(((.....(((((((..(((((........)).(((((..........)))))..........................))).))))))).......))). (-24.20 = -23.56 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:14 2006