Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,348,485 – 16,348,578 |
Length | 93 |
Max. P | 0.981699 |
Location | 16,348,485 – 16,348,578 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 94.41 |
Mean single sequence MFE | -32.28 |
Consensus MFE | -26.36 |
Energy contribution | -26.44 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -1.99 |
Structure conservation index | 0.82 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940348 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16348485 93 + 27905053 UCGCUUUGCACAUUUGUGCUGAGCACUGAGGACCCUUGAGCAGUUUUCAGCUCUUGCCCGGAAAGUCCAAUCCCUCUGUCAGUGGCACAUCCA ..((((.((((....)))).)))).....(((.....((((........)))).(((((.((.((..........)).)).).))))..))). ( -25.80) >DroSec_CAF1 48160 93 + 1 UCGCUUUGCACAUUUGUGCUGAGCACUGAGGGCCCUUGAGCAGUUUCCAGCUCUUGGCCGGGAAGUCCAAUCCCUCUGUCAGUGGCACAUCCA ..((((.((((....)))).))))(((((.((((...((((........))))..))))((((.......))))....))))).......... ( -35.60) >DroSim_CAF1 56824 93 + 1 UCGCUUUGCACAUUUGUGCUGAGCACUGAGGACCCUUGAGCAGUUUUCAGCUCUUGGCCGGGAAGUCCAAUCCCUCUGUCAGUGGCACAUCCA ..((((.((((....)))).))))(((((((.((...((((........))))..))))((((.......))))....))))).......... ( -32.00) >DroEre_CAF1 47122 93 + 1 UCGCUUUGCACAUUUGUGCUGAGCACUGAGGGCCCUUGAGCAGCAUUCAGCUCUUGGCCGGGAUGCCCAAUCCCACUGUCAGUGGCACAUCCA ..((((.((((....)))).))))(((((.((((...((((........))))..))))(((((.....)))))....))))).......... ( -38.60) >DroYak_CAF1 64446 93 + 1 UCGCUUUGCACAUUUGUGCUGAGCUCUGAGGACCCUUGAGCAGCUUUCAGCUCUUGGCCGGGAAGUCCAAUGCGUCUGUCAGUGGCACAUCCA ..((((.((((....)))).)))).....((.((...((((........))))..)))).(((.(((((.(((....).)).))).)).))). ( -29.40) >consensus UCGCUUUGCACAUUUGUGCUGAGCACUGAGGACCCUUGAGCAGUUUUCAGCUCUUGGCCGGGAAGUCCAAUCCCUCUGUCAGUGGCACAUCCA ..((((.((((....)))).))))(((((((..((..((((........))))..))))(((...)))..........))))).......... (-26.36 = -26.44 + 0.08)
Location | 16,348,485 – 16,348,578 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 94.41 |
Mean single sequence MFE | -32.94 |
Consensus MFE | -28.42 |
Energy contribution | -28.86 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.90 |
Structure conservation index | 0.86 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16348485 93 - 27905053 UGGAUGUGCCACUGACAGAGGGAUUGGACUUUCCGGGCAAGAGCUGAAAACUGCUCAAGGGUCCUCAGUGCUCAGCACAAAUGUGCAAAGCGA .((.....))(((((....((((.......))))((((..((((........))))....)))))))))(((..((((....))))..))).. ( -29.40) >DroSec_CAF1 48160 93 - 1 UGGAUGUGCCACUGACAGAGGGAUUGGACUUCCCGGCCAAGAGCUGGAAACUGCUCAAGGGCCCUCAGUGCUCAGCACAAAUGUGCAAAGCGA .((.....))(((((....((((.......))))((((..((((.(....).))))...)))).)))))(((..((((....))))..))).. ( -38.30) >DroSim_CAF1 56824 93 - 1 UGGAUGUGCCACUGACAGAGGGAUUGGACUUCCCGGCCAAGAGCUGAAAACUGCUCAAGGGUCCUCAGUGCUCAGCACAAAUGUGCAAAGCGA .((.....))(((((....((((.......))))((((..((((........))))...)))).)))))(((..((((....))))..))).. ( -32.60) >DroEre_CAF1 47122 93 - 1 UGGAUGUGCCACUGACAGUGGGAUUGGGCAUCCCGGCCAAGAGCUGAAUGCUGCUCAAGGGCCCUCAGUGCUCAGCACAAAUGUGCAAAGCGA .((.....))(((((....(((((.....)))))((((..((((........))))...)))).)))))(((..((((....))))..))).. ( -35.50) >DroYak_CAF1 64446 93 - 1 UGGAUGUGCCACUGACAGACGCAUUGGACUUCCCGGCCAAGAGCUGAAAGCUGCUCAAGGGUCCUCAGAGCUCAGCACAAAUGUGCAAAGCGA (((.....)))((((..(((.(.((((.((....))))))((((........))))..).))).)))).(((..((((....))))..))).. ( -28.90) >consensus UGGAUGUGCCACUGACAGAGGGAUUGGACUUCCCGGCCAAGAGCUGAAAACUGCUCAAGGGUCCUCAGUGCUCAGCACAAAUGUGCAAAGCGA .((.....))(((((....((((.......))))((((..((((........))))...)))).)))))(((..((((....))))..))).. (-28.42 = -28.86 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:13 2006