Locus 6265

Sequence ID 3R_DroMel_CAF1
Location 16,334,278 – 16,334,395
Length 117
Max. P 0.921086
window10219

overview

Window 9

Location 16,334,278 – 16,334,395
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.81
Mean single sequence MFE -34.45
Consensus MFE -20.78
Energy contribution -20.12
Covariance contribution -0.66
Combinations/Pair 1.42
Mean z-score -2.23
Structure conservation index 0.60
SVM decision value 1.14
SVM RNA-class probability 0.921086
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16334278 117 - 27905053
AGGAAUGCGACUACAUCCAGAAGACCAUCGGGUAUGUGGGCUCUAAGCA---CGUCAAGCACCCCUGGAGGGCCAUCUUCACGUCGAUGCCAUUUUAUGCCAUCAUGGCCUCGCAUUUCU
((((((((((.....(((((..(.....)((((.((((.((.....)).---)).))...))))))))).((((((.........((((.(((...))).)))))))))))))))))))) ( -36.30)
>DroVir_CAF1 63990 117 - 1
AGGAGUGUGAGUACAUACAGAAAUCGAUUGGCUAUGUGGGCGCCAAGAA---GAUCAAGCACCCUUGGAAAGCGUUUUUCACAUCGAUGCCCUUCUAUGCCAUUAUUGCAUCACACUUCU
(((((((((((((((((.((..(.....)..)).))))((((...((((---(.(((((....)))))...(((((.........))))).))))).)))).....))).)))))))))) ( -31.90)
>DroGri_CAF1 52009 120 - 1
AGGAGUGCGAGUACAUACAUAAAACGAUUGGCUAUACGGGUUCAAACACCAAUAUCAAGCACCCGUGGAAGGCCAUAUUCACCUCAAUGGCCUUUUAUGCAAUUAUUGCAUCGCAUUUCU
((((((((((((....)).......(((((((((((..(((......)))..)))..)))...(((((((((((((..........))))))))))))))))))......)))))))))) ( -36.20)
>DroWil_CAF1 54406 117 - 1
AGGAAUGCGAUUACAUACAGAAGACAAUCGGCUAUGUGGGCACCAAGCA---UAUUAAGCAUCCAUGGAAGUCAAUUUUCACAUCGAUGGCAUUCUAUGCCAUUAUGGCUUCACAUUUCU
.(((.(((..(((((((..((......))...)))))))((.....)).---......))))))((((((((((...........((((((((...)))))))).))))))).))).... ( -28.10)
>DroMoj_CAF1 46856 117 - 1
AGGAGUGCGAGUACAUACAGAAAACGAUUGGAUACACGGGCCCCCAGAC---CAUCAAGCACCCGUGGAAGGCAAUCUUCACAUCCAUGGCUUUCUAUGCAAUCAUUGCCUCGCACUUCU
(((((((((((.......(((((.(.((.((((.((((((.........---.........))))))((((.....))))..)))))).).)))))..(((.....)))))))))))))) ( -38.97)
>DroAna_CAF1 28737 117 - 1
AGGAGUGUGAAUACAUUCAGAAGACCAUCGGCUAUGUGGGCACAAAACA---CAUCAAGCAUCCCUGGAAGUCAAUUUUCACAUCCAUGGCUUUCUACGCCAUUAUGGCUUCGCACUUCU
(((((((((((.......((((..((((..((((((((.........))---)))..)))......(((.((........)).)))))))..))))..(((.....)))))))))))))) ( -35.20)
>consensus
AGGAGUGCGAGUACAUACAGAAAACGAUCGGCUAUGUGGGCACCAAGAA___CAUCAAGCACCCCUGGAAGGCAAUUUUCACAUCGAUGGCAUUCUAUGCCAUUAUGGCAUCGCACUUCU
((((((((((...................((((((..(((.....................)))...((((.....))))......))))))......(((.....))).)))))))))) (-20.78 = -20.12 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:07 2006