| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,333,525 – 16,333,643 |
| Length | 118 |
| Max. P | 0.803141 |
| Location | 16,333,525 – 16,333,643 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.97 |
| Mean single sequence MFE | -33.93 |
| Consensus MFE | -21.68 |
| Energy contribution | -21.82 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.803141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16333525 118 - 27905053 --GUCCCGUACCUAAUUUAUAGCGUUAAUCACCUCGACAUUGCGCCCCAGCACGCCAGUGUUCUGAUGGGCAUUGGCAACACAUUUGCCACCAUUCCGGGCAUCGUGAGUCCGCUGCUAA --...................((((...((.....))....))))..((((..((((((((((....))))))))))..(((...((((.........))))..))).....)))).... ( -33.10) >DroVir_CAF1 63443 116 - 1 --UUCUUGAAAC--GCUUGCAGUGUCAAUCACUUGGACAUUGCACCACAGCACGCCAGUGUUCUGAUGGGCAUUGGCAAUACGUUUGCCACCAUUCCCGGCAUUGUCAGUCCCCUGCUGA --..........--...(((((((((.........)))))))))...(((((.((((((((((....))))))))))...(((..((((.........)))).)))........))))). ( -38.70) >DroGri_CAF1 50777 118 - 1 --UUCUUGUAACACACUUGCAGAGUCAAUCAUCUGGAUAUUGCACCGCAGCAUGCAAGUGUCCUGAUGGGUAUUGGCAACACUUUUGCCACAAUUCCCGGCAUUGUCAGUCCGCUGCUGA --................((((.......((((.((((((((((........))).))))))).))))((.((((((((......((((.........)))))))))))))).))))... ( -33.70) >DroWil_CAF1 53855 110 - 1 --UUCC--------UUCUUUAGCGUCAAUCACUUGGAUAUUGCGCCACAGCAUGCCAGUGUCCUGAUGGGCAUUGGCAACACUUUUGCCACCAUUCCCGGCAUCGUUAGUCCUUUACUUA --....--------....................((((..(((......)))(((((((((((....))))))))))).......((((.........))))......))))........ ( -29.90) >DroMoj_CAF1 46306 116 - 1 --UUCUCGCAAC--ACUUGCAGUGUCAAUCACUUGGAUAUCGCGCCGCAGCACGCCAGUGUGCUGAUGGGCAUCGGCAACACAUUCGCCACGAUUCCCGGCAUCGUCAGUCCACUGCUGA --.....(((((--((.....))))........(((((..((.(((.(((((((....)))))))..(((.((((((.........)))..))).))))))..))...))))).)))... ( -36.90) >DroAna_CAF1 28169 120 - 1 UCUUUCCAUUUCCAAUUUUCAGAGUCAAUCACUUGGACAUCGCCCCCCAACAUGCCAGUGUCCUGAUGGGCAUUGGUAAUACGUUUGCCACCAUUCCCGGAAUAGUGAGUCCACUGCUCA .....................((((........(((((.((((.........(((((((((((....)))))))))))............((......))....)))))))))..)))). ( -31.30) >consensus __UUCCCGUAAC__ACUUGCAGAGUCAAUCACUUGGACAUUGCGCCACAGCACGCCAGUGUCCUGAUGGGCAUUGGCAACACAUUUGCCACCAUUCCCGGCAUCGUCAGUCCACUGCUGA ..................................((((...(((.........((((((((((....))))))))))........((((.........)))).)))..))))........ (-21.68 = -21.82 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:06 2006