Locus 6263

Sequence ID 3R_DroMel_CAF1
Location 16,331,765 – 16,331,885
Length 120
Max. P 0.843795
window10217

overview

Window 7

Location 16,331,765 – 16,331,885
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.42
Mean single sequence MFE -32.88
Consensus MFE -32.14
Energy contribution -32.14
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.98
SVM decision value 0.76
SVM RNA-class probability 0.843795
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16331765 120 - 27905053
GCAGUGCAAAAAACUGAUACGACAUGCUGAUUACCUUCAUAAAGGUAUUAAAAGAUAUGGGUGGAAAGGUAGGCGGUCUUAUAGAGGCGGGCUUCUGGCUGCGCGCGAUAAUAAAUUGCA
(((((...............(((.((((...((((((..((...(((((....)))))...))..)))))))))))))...((((((....)))))))))))..(((((.....))))). ( -32.00)
>DroSec_CAF1 34972 120 - 1
GCAGUGCAAAAAACUGAUACGACAUGCUGAUUACCUUCAUAAAGGUAUUAAAAGAUAUGGGUGGAAAGGUAGGCGGUCUUAUAGAGGCGGGCUUCUGGCUGCGCGCGAUAAUAAAUUGCA
(((((...............(((.((((...((((((..((...(((((....)))))...))..)))))))))))))...((((((....)))))))))))..(((((.....))))). ( -32.00)
>DroSim_CAF1 36579 120 - 1
GCAGUGCAAAAAACUGAUACGACAUGCUGAUUACCUUCAUAAAGGUAUUAAAAGAUAUGGGUGGAAAGGUAGGCGGUCUUAUAGAGGCGGGCUUCUGGCUGCGCGCGAUAAUAAAUUGCA
(((((...............(((.((((...((((((..((...(((((....)))))...))..)))))))))))))...((((((....)))))))))))..(((((.....))))). ( -32.00)
>DroEre_CAF1 33197 120 - 1
GCAGUGCAAAAAACUGAUACGACAUGCUGAUUACCUUCAUAAAGGUAUUAAACGAUAUGGGUGGAAAGGUAGGCGGUCUUAUAGAGGCGGGCUUCUGGCUGCGCGCGAUGAUAAAUUGCA
(((((...............(((.((((...((((((..((...(((((....)))))...))..)))))))))))))...((((((....)))))))))))..(((((.....))))). ( -32.70)
>DroYak_CAF1 48190 120 - 1
GCAGUGCAAAAAACUGAUACGACAUGCUGAUUACCUUCAUAAAGGUAUUAAAUGAUAUUGGUGGAAAGGUAGGCGGUCUUAUAGAGGCCGGCUUCUGGCUGCGCGCGAUAAUAAAUUGCA
...((((.....((..(((...(((..((((.(((((....))))))))).))).)))..))((..(((.((.(((((((...))))))).)))))..))))))(((((.....))))). ( -35.70)
>consensus
GCAGUGCAAAAAACUGAUACGACAUGCUGAUUACCUUCAUAAAGGUAUUAAAAGAUAUGGGUGGAAAGGUAGGCGGUCUUAUAGAGGCGGGCUUCUGGCUGCGCGCGAUAAUAAAUUGCA
(((((...............(((.((((...((((((..((...(((((....)))))...))..)))))))))))))...((((((....)))))))))))..(((((.....))))). (-32.14 = -32.14 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:05 2006