Locus 6260

Sequence ID 3R_DroMel_CAF1
Location 16,330,357 – 16,330,475
Length 118
Max. P 0.735399
window10211

overview

Window 1

Location 16,330,357 – 16,330,475
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.83
Mean single sequence MFE -29.13
Consensus MFE -26.14
Energy contribution -25.70
Covariance contribution -0.44
Combinations/Pair 1.18
Mean z-score -1.28
Structure conservation index 0.90
SVM decision value 0.44
SVM RNA-class probability 0.735399
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16330357 118 + 27905053
UAUUUUAGAAAGUCAA--GUGGCAGGUGUUCCGUUACCCCAAAUUAAAUUAAGUAAUUAUGAGGUCAGCGAAGGGUGUCUCAUGCGAAUUUAAUGGGACACUUUUGAUGGGAGCUAUAUA
...........(((..--..)))....(((((((((((.(((((((.......))))).)).))).))).(((((((((((((.........)))))))))))))....)))))...... ( -30.20)
>DroSec_CAF1 33592 120 + 1
UAUUUUAGCAAGUCAAUAUUGGCAGGUGUUCUGUUAUCCCAAAUUCAAUUAAGUAAUUAUGAGGUCAGCGAAGGGUGUCUCAUGCGAAUUUAAUGGGACACUUUUGGUGGAAGCUAUAUA
.....((((..........((((((.....))))))(((....((((..(((....)))))))....((.(((((((((((((.........))))))))))))).))))).)))).... ( -30.90)
>DroSim_CAF1 35163 120 + 1
UAUUUUAGCAAGUCAAUAUUGACAGGUGUUCUGUUACCCCAAAUUCAAUUAAGUAAUUAUGAGGUCAGCGAAGGGUAUCUCAUGCGAAUUUAAUGGGACACUUUUGGUGGAAGCUAUAUA
.....((((..((((....))))(((((((((((((.....(((((...(((....)))((((((.(.(....).)))))))...)))))))))))))))))).........)))).... ( -29.10)
>DroEre_CAF1 31741 120 + 1
UAUUUUAGCAAGUCAAUGUUGGCAGGUGUGCUGUUACCCCAAAUUCAAUUAAGUAAUUAUGAGGUCAGUGAAGGGUGUCUCAUGCGUAUUUAAUAGGACACCUUUGGUGAAAACUAUAUA
..(((((.(((((((....))))((((((.((((((...............((((..(((((((.((.(....).)))))))))..)))))))))).))))))))).)))))........ ( -27.66)
>DroYak_CAF1 46794 120 + 1
UAUUUUAGCAAGUCAAUGUUGGCAGGUGUGGUGUUACCCCAAAAUCAAUUAAGUAAUUAUGAGGUCAGCGAAGGGUGUCUCAUGCGAAUUUAAUAGGACACCUUUGAUGAGAACUAUAUA
..(((((.(((((((....))))((((((((.....))......((.(((((((...(((((((.((.(....).)))))))))...))))))).))))))))))).)))))........ ( -27.80)
>consensus
UAUUUUAGCAAGUCAAUAUUGGCAGGUGUUCUGUUACCCCAAAUUCAAUUAAGUAAUUAUGAGGUCAGCGAAGGGUGUCUCAUGCGAAUUUAAUGGGACACUUUUGGUGGAAGCUAUAUA
..(((((.(((((((....))))(((((((((((((..........((((....))))((((((.((.(....).)))))))).......)))))))))))))))).)))))........ (-26.14 = -25.70 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:59 2006