Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,316,008 – 2,316,120 |
Length | 112 |
Max. P | 0.730285 |
Location | 2,316,008 – 2,316,120 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.59 |
Mean single sequence MFE | -43.13 |
Consensus MFE | -27.00 |
Energy contribution | -26.70 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.37 |
Mean z-score | -1.71 |
Structure conservation index | 0.63 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2316008 112 + 27905053 --GAUGCAGGGGCAGCGGGGGCAGUGGCGGUACAUGCCACGCCUACCGGUGCAGCGGC------GGUGGGCGUGGGAGCGGAGGUUGUGAUGCUAAUAGUGAUGUAAGUGGUAUCAGUAU --(((((.(..(((.(((((((.((((((.....)))))))))).))).)))..).((------....(((((.(.(((....))).).)))))....))..........)))))..... ( -43.20) >DroSim_CAF1 21950 105 + 1 --GAUGCAGGGGCAGCGGGGGCAGUGGCGGCACAUGCCACGCCUACCGGUGCAGCGGC------GGUGGGCGUGGGAGCGGAGGUUGUGAUGCUAAUAGUGAUGUAAGUGCAC------- --..((((...(((((...((((.(.(((((.(.(.((((((((((((.((...)).)------))))))))))).)..)...))))).)))))....))..)))...)))).------- ( -43.40) >DroEre_CAF1 27168 116 + 1 --GUUGCAGGGGCAGCGGGGGCAGUGGCGGCACAUGCCACGCCUACCGCUGCAGCGGCGGAGGCGGUGGGCGUGGGAGCGGAGGUUGUGAUGUAAACAGUGAUGUAAGUGCCAUCAGC-- --(((((....)))))(..((((((.(((((.(.(.((((((((((((((((....))...)))))))))))))).)..)...))))).))....(((....)))...))))..)...-- ( -52.20) >DroWil_CAF1 87143 107 + 1 CGGCUGCAGAGGAAGUGGGGGCAGUGGCAGC---UGUCAUGCCCGACGUUGCAGUGGC------GGUGGUCGGGGCAGCGGAGGUUGUGAUGUUAACAGUGAUGUGAGUCGAAACA---- (.(((((............((((((....))---))))...(((((((..((....))------..).))))))))))).)..(((.((((....(((....)))..)))).))).---- ( -39.10) >DroYak_CAF1 21068 116 + 1 --GAUGCAGGGGCAGUGGGGGGAGUGGCGGCACAUGCCACGCCUACCGCUGCAGCGGCGGAGGCGGUGGGCGAGGGAGCGGAGGUUGUGAUGUAAACAGUGAUGUAAGUGCUAUUAGA-- --..(((....(((((((..((.((((((.....)))))).))..)))))))....)))..((((.(..((......))................(((....))).).))))......-- ( -40.20) >DroAna_CAF1 24246 106 + 1 --GAUGCCGGGGGAGCGGGGGCAGUGGCGGCACGUGCCACGCCUAUCGCUGCAGC---------GGUGGGCGAGGUAGUGGAGGUUGUGAUGUAAACAGUGAUGUAAGUACAGUU---CC --.........(((((.......((.(((((.((((((.((((((((((....))---------)))))))).)))).))...))))).))(((.(((....)))...))).)))---)) ( -40.70) >consensus __GAUGCAGGGGCAGCGGGGGCAGUGGCGGCACAUGCCACGCCUACCGCUGCAGCGGC______GGUGGGCGUGGGAGCGGAGGUUGUGAUGUAAACAGUGAUGUAAGUGCAAUCA____ ....((((...(((((((((((.((((((.....)))))))))).))))))).............((..(((..(.(((....))).)..)))..)).....)))).............. (-27.00 = -26.70 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:48 2006