Locus 6258

Sequence ID 3R_DroMel_CAF1
Location 16,328,961 – 16,329,057
Length 96
Max. P 0.782266
window10206

overview

Window 6

Location 16,328,961 – 16,329,057
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 94.38
Mean single sequence MFE -24.00
Consensus MFE -17.72
Energy contribution -18.04
Covariance contribution 0.32
Combinations/Pair 1.11
Mean z-score -2.63
Structure conservation index 0.74
SVM decision value 0.56
SVM RNA-class probability 0.782266
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16328961 96 - 27905053
GGGCCAACUAUAUAACUAACUGUUUAACUUCUAAACUGGAGCUUAACUCCCAACGAGUUGGCCGCAAUAAAUAAAGUUUAUAAAGAUUUUGAGCAU
.((((((((............(((((.....))))).((((.....)))).....))))))))........((((((((....))))))))..... ( -22.70)
>DroSec_CAF1 32179 96 - 1
GGGCCAACUAUAUAACUAACUGUUUAACUUCUAAACUGGGGCUUAACUCCCAACGAGUUGGCCGCAAUAAAUAAAGUUUAUAAAGAUUUUGAGCAU
.((((((((............(((((.....)))))(((((......)))))...))))))))........((((((((....))))))))..... ( -24.00)
>DroSim_CAF1 33811 96 - 1
GGGCCAACUAUAUAACUAACUGUAUAACUUCUAAACUGGGGCUUAACUCCCAACGAGUUGGCCGCAAUAAAUAAAGUUUAUAAAGAUUUUGAGCAU
.(((((((((((((......)))))...........(((((......)))))...))))))))........((((((((....))))))))..... ( -22.90)
>DroEre_CAF1 30405 96 - 1
GGGCCAACAAUAUAACUAACUAUGUAACUUUUAAGCUGGGGCUUAACUCUCAACGAGUUGGGCGCAAUAAAUAAAGUUUAUAAAGAUUUUGGGCAU
.(.((((..(((((......)))))..((((((((((.(.(((((((((.....))))))))).).........)))))).))))...)))).).. ( -24.20)
>DroYak_CAF1 45310 96 - 1
GGGCCAACAAUAUAACUAACUAUAUAACUUUUAAGCUGGGGCUUAACUCCCAACGAGUUGGCCGCCAUAAAUAAAGUUUAUAAAGAUUUUGGGCAU
.(((((((.(((((......))))).........(.(((((......))))).)..)))))))(((.....((((((((....))))))))))).. ( -26.20)
>consensus
GGGCCAACUAUAUAACUAACUGUAUAACUUCUAAACUGGGGCUUAACUCCCAACGAGUUGGCCGCAAUAAAUAAAGUUUAUAAAGAUUUUGAGCAU
.(((((((.(((((......)))))...........(((((......)))))....)))))))((......((((((((....)))))))).)).. (-17.72 = -18.04 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:54 2006