| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,316,770 – 16,316,867 |
| Length | 97 |
| Max. P | 0.947966 |
| Location | 16,316,770 – 16,316,867 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 76.04 |
| Mean single sequence MFE | -22.12 |
| Consensus MFE | -12.51 |
| Energy contribution | -13.73 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.947966 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16316770 97 + 27905053 AUUGAGCAGUGAUUUCAAAGGAAAUCAAAUACACAAUCCACCAGCUGAAUCUGGAUGGGGUUGACCGACCAACAAAGGUAAGGGAGGCU------AGCAAAAC .....((..(((((((....)))))))..........(((((((......)))).)))((((..((.(((......)))..))..))))------.))..... ( -25.10) >DroSec_CAF1 14500 93 + 1 AUUGAGCAGUGAUUUCAAAGGAAAUCAAAUACACAAUCCACCAGCUGAAUCUCAAUGGGGUUCA----GCAACAAAGCUAAGGGAGGCC------AACAAAAC .((((((..(((((((....)))))))................(((((((((.....)))))))----))......)))..((....))------..)))... ( -25.00) >DroSim_CAF1 19663 93 + 1 AUUGAGCAGUGAUUUCAAAGGAAAUCAAAUACACAAUCCACCAGCUGAAUCUGGAUGGGGUUGA----CCAACAAAGCCAAGGGAGGCC------AACAAAAC .(((.((..(((((((....)))))))......((((((.((((......))))...)))))).----........)))))((....))------........ ( -22.70) >DroEre_CAF1 17828 86 + 1 AUUGAGCAGUGAUUUCAAAGGAAAUCAAAUACACAAUCCACCGGCAGAAUCUGGAUGGGGUUGU-----------------UGGGUGCCCCACAAGGCAAAAC .....((..(((((((....))))))).....(((((((.((((......))))...)))))))-----------------((((...))))....))..... ( -22.90) >DroYak_CAF1 29319 80 + 1 AUUGAGCAGUGAUUUCAAAGGAAAUCAAAUACACAAUCCACCAGCAGAAUCUGGAUGGGGUUGU-----------------UGGAGGCC------AACAAAAC .(((.((..(((((((....)))))))....((((((((.((((......))))...)))))).-----------------))...)))------))...... ( -21.90) >DroAna_CAF1 14287 90 + 1 AUUGAACAGUGAUUUCAAAGGAAAUCAAAUACACAAUACACGCCAACGAGCUGG--GGAGUGGG----CCAGGACAGAAAAG--UUUCC-----AACCAAAAC ((((.....(((((((....)))))))......))))...(.(((......)))--.)..(((.----...((((......)--)))..-----..))).... ( -15.10) >consensus AUUGAGCAGUGAUUUCAAAGGAAAUCAAAUACACAAUCCACCAGCAGAAUCUGGAUGGGGUUGA____CCAACAAAG__AAGGGAGGCC______AACAAAAC .(((.....(((((((....)))))))......((((((.((((......))))...))))))..................................)))... (-12.51 = -13.73 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:53 2006